Işıl Karabey Aksakallı

Dr. Işıl Karabey Aksakallı

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 April 2021 in Balkan Journal of Electrical and Computer Engineering
Verified
Journal Article
Open access
PDF file
IAIşıl Karabey Aksakallı
Işıl Karabey Aksakallı
SKSibel Kaçdioğlu
Sibel Kaçdioğlu
YHY. Sinan Hanay
Y. Sinan Hanay
Today, kidney stone detection is done manually on medical images. This process is time-consuming and subjective as it depends on the physician. This study aims to classify healthy or patient persons according to the status of kidney stones from medical images using various machine learning methods and Convolutional Neural Networks (CNNs). We evaluated various machine learning methods such as Decision Trees (DT), Random Forest (RF), Support Vector Machines (SVC), Multilayer Perceptron (MLP), K-Nearest Neighbor (kNN), Naive Bayes (BernoulliNB), and deep neural networks using CNN. According to the experiments, the Decision Tree Classifier (DT) has the best classification result. This method has the highest F1 score rate with a success rate of 85.3% using the S+U sampling method. The experimental results show that the Decision Tree Classifier(DT) is a feasible method for distinguishing the kidney x-ray images.

1 January 2023 in International Journal of Intelligent Systems
Verified
Journal Article
Open access
PDF file
UKUgur Kilic
Ugur Kilic
IAIşıl Karabey Aksakallı
Işıl Karabey Aksakallı
GOGulsah Tumuklu Ozyer
Gulsah Tumuklu Ozyer
TATugay Aksakalli
Tugay Aksakalli
BÖBarış Özyer
Barış Özyer
SASenol Adanur
Senol Adanur
In diagnosing kidney stone disease, clinical specialists often apply medical imaging techniques such as CT, X‐Ray and US. Among these imaging techniques, X‐Ray is frequently chosen as the primary examination method in emergency services due to its low cost, accessibility, and low radiation levels. However, interpreting the X‐Ray images by inexperienced specialists can be challenging due to the low image quality and the presence of noise. In this study, we propose a computer‐aided diagnosis system based on deep neural networks to assist clinical specialists in detecting kidney stones using Direct Urinary System X‐Ray (DUSX) images. Firstly, in consultation with clinical specialists, we created a new dataset composed of 630 DUSX images and presented it publicly. We also defined preprocessing steps that incorporate image enhancement techniques such as GF, LoG, BF, HE, CLAHE, and CBC to enable deep neural networks to perceive the images more clearly. With these techniques, we considered the noise reduction in the DUSX images and enhanced the poor quality, especially in terms of contrast. For each preprocessing step, we created models to detect kidney stones using YOLOv4 and Mask R‐CNN architectures, which are common CNN‐based object detectors. We examined the effects of the preprocessing steps on these models. To the best of our knowledge, the combination of BF and CLAHE which is called CBC in this study, has not been applied before in the literature to enhance DUSX images. In addition, this study is the first in its field in which the YOLOv4 and Mask R‐CNN architectures have been used for the detection of kidney stones. The experimental results demonstrated the most accurate method is the YOLOv4 model, which includes the CBC preprocessing step, as the result model. This model shows that the accuracy rate, precision, recall, and F1‐score were found as 96.1%, 99.3% 96.5%, and 97.9% respectively in the test set. According to these performance metrics, we expect that the proposed model will help to reduce the unnecessary radiation exposure and associated medical costs that come with CT scans.

5 February 2021 in IEEE Access
Verified
Journal Article
Open access
IAIşıl Karabey Aksakallı
Işıl Karabey Aksakallı
TÇTURGAY ÇELIK
TURGAY ÇELIK
ACAhmet Burak Can
Ahmet Burak Can
Bedir TekinerdoganBedir Tekinerdogan
Bedir Tekinerdogan
Microservice architectures rely on the development of modular and independent software units, which typically address a single task and communicate with other microservices via well-defined interfaces. This has several benefits such as easier maintenance and update of services. However, deploying a microservice-based application is often more complicated than a monolithic application. While a monolithic application can be deployed one at a time on a group of similar servers behind a load balancer, a microservice-based application consists of different microservices and each microservice usually has more than one runtime instance that needs to be configured and deployed. For a small number of microservices and applications, the deployment could be done manually. However, a large number of microservices are frequently observed in practice. In such cases, the deployment becomes cumbersome and error-prone and does not scale with the increased number of services. To cope with this problem, we present a systematic approach and the corresponding tool support for enabling the deployment of microservices to resources that have limited capacity. Hereby, we model and define the design space given the deployment parameters and automatically derive the feasible deployment solution. The approach is validated using a taxi-hailing system case study inspired by Uber which has spread all over the world in recent years.

9 December 2024 in Diagnostics
Verified
Journal Article
Open access
PDF file
KDKubra Demir
Kubra Demir
ÖSÖzlem Çomaklı Sökmen
Özlem Çomaklı Sökmen
IAIşıl Karabey Aksakallı
Işıl Karabey Aksakallı
KAKubra Torenek Agirman
Kubra Torenek Agirman
Background/Objectives: The growing demand for artificial intelligence (AI) in healthcare is driven by the need for more robust and automated diagnostic systems. These methods not only provide accurate diagnoses but also promise to enhance operational efficiency and optimize resource utilization in clinical workflows. In the field of dental lesion detection, the application of deep learning models to various imaging techniques has gained significant prominence. This study presents a comprehensive systematic review of the utilization of deep learning methods for detecting dental lesions across different imaging modalities, including panoramic imaging, periapical radiographs, and cone-beam computed tomography (CBCT). A systematic search was conducted following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines to ensure a structured and transparent review process. Methods: This study addresses four key research questions related to the types of objects used for AI in dental images, state-of-the-art approaches for detecting lesions in dental images, data augmentation methods, and challenges and possible solutions to the existing AI-based dental lesion detection. Furthermore, this systematic review was performed on 29 primary studies identified from multiple electronic databases. This review focused on studies published between 2019 and 2024, sourced from IEEE, Web of Knowledge, Springer, ScienceDirect, PubMed, and Google Scholar. Results: We identified five types of lesions in dental images as periapical lesions, cyst lesions, jawbone lesions, dental caries, and apical lesions. Among the fourteen state-of-the-art deep learning approaches, the results demonstrate that deep learning models, such as U-Net, AlexNet, and You Only Look Once (YOLO) version 8 (YOLOv8) are commonly employed for dental lesion detection. These deep learning models have the potential to serve as integral components of decision-making processes by improving detection accuracy and supporting clinical workflows. Furthermore, we found that among twelve types of data augmentation techniques, flipping, rotation, and reflection methods played an important role in increasing the diversity of the datasets. We also identified six challenges for dental lesion detection, and the main issues were identified as data integration, poor data quality, limited model generalization, and overfitting. Proposed solutions against the aforementioned challenges include the integration of larger datasets, model optimization, and diversification of data sources. Conclusions: This study provides a comprehensive overview of current methodologies and potential advancements in dental lesion detection using deep learning. The findings indicate that possible solutions against the challenges of AI-based diagnostic methods in dental lesion detection need to be more generalizable regardless of image type, the number of data, and data quality.

15 October 2021 in Applied Sciences
Verified
Journal Article
Open access
PDF file
IAIşıl Karabey Aksakallı
Işıl Karabey Aksakallı
TÇTURGAY ÇELIK
TURGAY ÇELIK
ACAhmet Burak Can
Ahmet Burak Can
Bedir TekinerdoganBedir Tekinerdogan
Bedir Tekinerdogan
Microservice architecture consists of a collection of loosely coupled, self-contained services that can be deployed independently. Given the limited capacity of the resources for a large number of services, the deployment of the services does not scale well and leads to operational complexity and runtime overhead. This paper proposes a model-driven approach for the automated deployment of microservices to minimize the execution cost and communication costs among the microservices. The identification of the feasible deployment is defined at the architecture design level based on the provided capacity of the resources and the collection of microservices. The corresponding tool support using Eclipse Modeling Environment is described, and a case study on book shopping is used to illustrate the approach.

12 September 2023 in Cognitive Neurodynamics
Verified
Journal Article
Closed access
PDF file
IAIşıl Karabey Aksakallı
Işıl Karabey Aksakallı
NBNursena Baygin
Nursena Baygin
YHYuki Hagiwara
Yuki Hagiwara
JPJose Kunnel Paul
Jose Kunnel Paul
TIThomas Iype
Thomas Iype
U Rajendra AcharyaU Rajendra Acharya
U Rajendra Acharya