Tomáš Kocábek

Dr. Tomáš Kocábek

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Research Focus & Metrics

Academic Career Length

30Years (1997-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2012 in The Plant Cell
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MBMartin Bringmann
Martin Bringmann
ELEryang Li
Eryang Li
ASArun Sampathkumar
Arun Sampathkumar
TKTomáš Kocábek
Tomáš Kocábek
MHMarie-Theres Hauser
Marie-Theres Hauser
SPStaffan Persson
Staffan Persson
In plants, regulation of cellulose synthesis is fundamental for morphogenesis and plant growth. Cellulose is synthesized at the plasma membrane, and the orientation of synthesis is guided by cortical microtubules; however, the guiding mechanism is currently unknown. We show that the conditional root elongation pom2 mutants are impaired in cell elongation, fertility, and microtubule-related functions. Map-based cloning of the POM-POM2 locus revealed that it is allelic to CELLULOSE SYNTHASE INTERACTING1 (CSI1). Fluorescently tagged POM2/CSI1s associated with both plasma membrane–located cellulose synthases (CESAs) and post-Golgi CESA-containing compartments. Interestingly, while CESA insertions coincided with cortical microtubules in the pom2/csi1 mutants, the microtubule-defined movement of the CESAs was significantly reduced in the mutant. We propose that POM2/CSI1 provides a scaffold between the CESAs and cortical microtubules that guide cellulose synthesis.

1 June 2006 in Phytochemistry
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Journal Article
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KHKlara Hoyerova
Klara Hoyerova
AGAlena Gaudinova
Alena Gaudinova
ICIng. Jiří CSc.
Ing. Jiří CSc.
PDPetre I. Dobrev
Petre I. Dobrev
TKTomáš Kocábek
Tomáš Kocábek
MKMiroslav Kamínek
Miroslav Kamínek

8 July 2016 in Plant Molecular Biology
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JMJaroslav Matoušek
Jaroslav Matoušek
TKTomáš Kocábek
Tomáš Kocábek
JPJosef Patzak
Josef Patzak
JBJindřich Bříza
Jindřich Bříza
KSKristýna Siglová
Kristýna Siglová
KKKarel Krofta
Karel Krofta

20 February 2012 in BMC Plant Biology
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JMJaroslav Matoušek
Jaroslav Matoušek
TKTomáš Kocábek
Tomáš Kocábek
JPJosef Patzak
Josef Patzak
ZFZoltán Füssy
Zoltán Füssy
JPJitka Procházková
Jitka Procházková
AHArne Heyerick
Arne Heyerick
Background: Lupulin glands of hop produce a specific metabolome including hop bitter acids valuable for the brewing process and prenylflavonoids with promising health-beneficial activities. The detailed analysis of the transcription factor (TF)-mediated regulation of the oligofamily of one of the key enzymes, i.e., chalcone synthase CHS_H1 that efficiently catalyzes the production of naringenin chalcone, a direct precursor of prenylflavonoids in hop, constitutes an important part of the dissection of the biosynthetic pathways leading to the accumulation of these compounds.Results: Homologues of flavonoid-regulating TFsHlMyb2(M2),HlbHLH2(B2) andHlWDR1(W1) from hop were cloned using a lupulin gland-specific cDNA library from the hop variety Osvald's 72. Using a "combinatorial" transient GUS expression system it was shown that these unique lupulin-gland-associated TFs significantly activated the promoter (P) ofchs_H1 in ternary combinations of B2, W1 and either M2 or the previously characterizedHlMyb3 (M3). The promoter activation was strongly dependent on the Myb-P binding box TCCTACC having a core sequence CCWACC positioned on its 5' end region and it seems that the complexity of the promoter plays an important role. M2B2W1-mediated activation significantly exceeded the strength of expression of nativechs_H1 gene driven by the 35S promoter of CaMV, while M3B2W1 resulted in 30% of the 35S:chs_H1 expression level, as quantified by real-time PCR. Another newly cloned hop TF,HlMyb7, containing a transcriptional repressor-like motif pdLNLD/ELxiG/S (PDLNLELRIS), was identified as an efficient inhibitor ofchs_H1-activating TFs. Comparative analyses of hop andA. thalianaTFs revealed a complex activation of Pchs_H1 and Pchs4 in combinatorial or independent manners.Conclusions: This study on the sequences and functions of various lupulin gland-specific transcription factors provides insight into the complex character of the regulation of thechs_H1 gene that depends on variable activation by combinations of R2R3Myb, bHLH and WDR TF homologues and inhibition by a Myb repressor.

1 September 1999 in Biologia plantarum
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MOM. OndřEj
M. OndřEj
TKTomáš Kocábek
Tomáš Kocábek
SRS. Rakouský
S. Rakouský
DWD. Wiesnerová
D. Wiesnerová
Using various transformation methods, T-DNA constructions for insertional mutagenesis were introduced into Arabidopsis thaliana and the pattern of segregation of hygromycin resistance selectable...

9 January 2008 in Plant Physiology
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Journal Article
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KHKlara Hoyerova
Klara Hoyerova
LPLucie Perry
Lucie Perry
PHPaul Hand
Paul Hand
MLMartina Laňková
Martina Laňková
TKTomáš Kocábek
Tomáš Kocábek
EZEva Zazimalova
Eva Zazimalova
We have isolated the cDNA of the gene PaLAX1 from a wild cherry tree (Prunus avium). The gene and its product are highly similar in sequences to both the cDNAs and the corresponding protein products of AUX/LAX-type genes, coding for putative auxin influx carriers. We have prepared and characterized transformed Nicotiana tabacum and Arabidopsis thaliana plants carrying the gene PaLAX1. We have proved that constitutive overexpression of PaLAX1 is accompanied by changes in the content and distribution of free indole-3-acetic acid, the major endogenous auxin. The increase in free indole-3-acetic acid content in transgenic plants resulted in various phenotype changes, typical for the auxin-overproducing plants. The uptake of synthetic auxin, 2,4-dichlorophenoxyacetic acid, was 3 times higher in transgenic lines compared to the wild-type lines and the treatment with the auxin uptake inhibitor 1-naphthoxyacetic acid reverted the changes caused by the expression of PaLAX1. Moreover, the agravitropic response could be restored by expression of PaLAX1 in the mutant aux1 plants, which are deficient in auxin influx carrier activity. Based on our data, we have concluded that the product of the gene PaLAX1 promotes the uptake of auxin into cells, and, as a putative auxin influx carrier, it affects the content and distribution of free endogenous auxin in transgenic plants.