Subhash Basak

Prof. Subhash Basak

Retired Senior Research Scientist and Adjunct Professor, Department of Chemistry and Biochemistry, University of Minnesota Duluth, Duluth, MN 55811, USA

Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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18 February 2000 in Journal of Chemical Information and Computer Sciences
Verified
Journal Article
Closed access
SBSubhash Basak
Subhash Basak
ABAlexandru T. Balaban
Alexandru T. Balaban
GGGregory D. Grunwald
Gregory D. Grunwald
BGBrian D. Gute
Brian D. Gute

22 June 2000 in Journal of Chemical Information and Computer Sciences
Verified
Journal Article
Closed access
SBSubhash Basak
Subhash Basak
GGGregory D. Grunwald
Gregory D. Grunwald
BGBrian D. Gute
Brian D. Gute
KBKrishnan Balasubramanian
Krishnan Balasubramanian
DODavid Opitz
David Opitz

14 December 2000 in Journal of Chemical Information and Computer Sciences
Verified
Journal Article
Closed access
SBSubhash Basak
Subhash Basak
DMDenise R. Mills
Denise R. Mills
ABAlexandru T. Balaban
Alexandru T. Balaban
BGBrian D. Gute
Brian D. Gute

12 January 2001 in Journal of Chemical Information and Computer Sciences
Verified
Journal Article
Closed access
DHDouglas M. Hawkins
Douglas M. Hawkins
SBSubhash Basak
Subhash Basak
XSXiaofang Shi
Xiaofang Shi

1 January 2007 in SAR and QSAR in Environmental Research
Verified
Journal Article
Closed access
SBSubhash Basak
Subhash Basak
DMD. Mills
D. Mills
MMM. M. Mumtaz
M. M. Mumtaz
Quantitative structure–activity relationship (QSAR) models were developed for the prediction of dermal absorption based on experimental log K p data for a diverse set of 101 chemicals obtained from the literature. Molecular descriptors including topostructural (TS), topochemical (TC), shape or three-dimensional (3D) and quantum chemical (QC) indices were calculated. Based on this information, a generic predictive model was created using the diverse set of 101 compounds. In addition, two submodels were prepared for subsets of 79 cyclic and 22 acyclic chemicals. A modified Gram–Schmidt variable reduction algorithm for descriptor thinning was followed by regression analyses using ridge regression (RR), principal components regression (PCR) and partial least squares regression (PLS). The RR results were found to be superior to PLS and PCR regressions. The cross-validated correlation coefficients for the full set and subsets were 0.67–0.87. Computational methods such as QSAR modelling can be used to augment existing data to prioritise chemicals that need to be studied further for toxicological evaluation and risk assessment.

Verified
Journal Article
Open access
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ANAshesh Nandy
Ashesh Nandy
SBSubhash Basak
Subhash Basak
The growing incidences of new viral diseases and increasingly frequent viral epidemics have strained therapeutic and preventive measures; the high mutability of viral genes puts additional strains on developmental efforts. Given the high cost and time requirements for new drugs development, vaccines remain as a viable alternative, but there too traditional techniques of live-attenuated or inactivated vaccines have the danger of allergenic reactions and others. Peptide vaccines have, over the last several years, begun to be looked on as more appropriate alternatives, which are economically affordable, require less time for development and hold the promise of multi-valent dosages. The developments in bioinformatics, proteomics, immunogenomics, structural biology and other sciences have spurred the growth of vaccinomics where computer assisted approaches serve to identify suitable peptide targets for eventual development of vaccines. In this mini-review we give a brief overview of some of the recent trends in computer assisted vaccine development with emphasis on the primary selection procedures of probable peptide candidates for vaccine development.