Mangroves are one of the blue carbon ecosystems. However, greenhouse gas emissions from mangrove soils may reduce the capacity of carbon storage in these systems. In this study, methane (CH₄) fluxes and soil properties of the top 10 cm layer were determined in subtropical (Kandelia obovata) and tropical (Avicennia marina) mangrove ecosystems of Taiwan for a complete seasonal cycle. Our results demonstrate that CH₄ emissions in mangroves cannot be neglected when constructing the carbon budgets and estimating the carbon storage capacity. CH₄ fluxes were significantly higher in summer than in winter in the Avicennia mangroves. However, no seasonal variation in CH₄ flux was observed in the Kandelia mangroves. CH₄ fluxes were significantly higher in the mangrove soils of Avicennia than in the adjoining mudflats; this trend, however, was not necessarily recapitulated at Kandelia. The results of multiple regression analyses show that soil water and organic matter content were the main factors regulating the CH₄ fluxes in the Kandelia mangroves. However, none of the soil parameters assessed show a significant influence on the CH₄ fluxes in the Avicennia mangroves. Since pneumatophores can transport CH₄ from anaerobic deep soils, this study suggests that the pneumatophores of Avicennia marina played a more important role than soil properties in affecting soil CH₄ fluxes. Our results show that different mangrove tree species and related root structures may affect greenhouse gas emissions from the soils.

The mass planting of mangroves has been proposed as a mitigation strategy to compensate for mangrove loss. However, the effects of mangrove vegetation on the abundance and community composition of macrobenthos remain controversial. The macrobenthic communities in four intact mangrove forests with different conditions and the adjacent nonvegetated mudflats of two mangrove species with distinct stand structures on the western coast of Taiwan were examined. Some macrobenthic taxa occurred only in the mangroves, suggesting macrobenthic critical habitats. Seasonal shift in community composition was more pronounced in the mudflats than in the mangroves, possibly due to the rich food supply, low temperature, and shelter function provided by mangrove forests. However, crab density was always lower in the mangroves than in the mudflats. There was a negative relationship between the stem density of Kandelia obovata (S., L.) and infaunal density. The pneumatophore density of Avicennia marina (Forsk.) correlated negatively with epifaunal density. Our results show that the response of macrobenthic abundance and community composition to mangrove vegetation was inconsistent. We reason that mangroves are critical habitats for the macrobenthos in the mudflats. However, if mangrove tree density is high, we predict that the macrobenthic density will decrease. This suggests that at some intermediate level of mangrove tree density, where there are enough mangrove trees to harbor a macrobenthic community but not enough trees to significantly reduce this density, mangroves management can be optimally achieved to promote the presence of a diverse and dense macrobenthic community.

Mangroves play an important role in carbon sequestration. However, mangroves can be sources of greenhouse gas (GHG) emissions. In this study, methane (CH₄) emissions and related soil properties were determined in multiple mangroves in Taiwan, including Kandelia obovata and Avicennia marina mangroves. K. obovata possess prop roots, whereas pneumatophores are found in A. marina. Our results showed that mangrove soils were significant sources of CH₄ emissions, which should be accounted for in mangrove carbon budgets. In particular, CH₄ emissions in the A. marina mangroves were approximately 50- to 100-fold those of the K. obovata mangroves and the adjoining mudflats. Multiple regression analyses indicated that the soil salinity and pH in K. obovata mangroves and the soil redox potential and organic content in the mudflats were the key factors affecting CH₄ emissions. However, the pneumatophore density alone explained approximately 48% of the variation in CH₄ emissions in the A. marina mangroves. More pneumatophores resulted in higher CH₄ emissions in the A. marina mangroves. Thus, compared with the assessed soil properties, the contribution of pneumatophores to the transportation of CH₄ from soil was more significant. In addition to soil properties, our results demonstrated that the root structure may also affect GHG emissions from mangroves.

Ectothermic fish exposure to hypothermal stress requires adjusting their metabolic molecular machinery, which was investigated using Indian medaka (Oryzias dancena; 10 weeks old, 2.5 ± 0.5 cm) cultured in fresh water (FW) and seawater (SW; 35‰) at room temperature (28 ± 1 °C). The fish were fed twice a day, once in the morning and once in the evening, and the photoperiod was 12 h:12 h light: dark. In this study, we applied two hypothermal treatments to reveal the mechanisms of energy metabolism via pgc-1α regulation in the gills of Indian medaka; cold-stress (18 °C) and cold-tolerance (extreme cold; 15 °C). The branchial ATP content was significantly higher in the cold-stress group, but not in the cold-tolerance group. In FW- and SW-acclimated medaka, the expression of genes related to mitochondrial energy metabolism, including pgc-1α, prc, Nrf2, tfam, and nd5, was analyzed to illustrate differential responses of mitochondrial energy metabolism to cold-stress and cold-tolerance environments. When exposed to cold-stress, the relative mRNA expression of pgc-1α, prc, and Nrf2 increased from 2 h, whereas that of tfam and nd5 increased significantly from 168 h. When exposed to a cold-tolerant environment, prc was significantly upregulated at 2 h post-cooling in the FW and SW groups, and pgc-1α was significantly upregulated at 2 and 12 h post-cooling in the FW group, while tfam and nd5 were downregulated in both FW and SW fish. Hierarchical clustering revealed gene interactions in the cold-stress group, which promoted diverse mitochondrial energy adaptations, causing an increase in ATP production. However, the cold-tolerant group demonstrated limitations in enhancing ATP levels through mitochondrial regulation via the PGC-1α energy metabolism pathway. These findings suggest that ectothermic fish may develop varying degrees of thermal tolerance over time in response to climate change. This study provides insights into the complex ways in which fish adjust their metabolism when exposed to cold stress, contributing to our knowledge of how they adapt.

We report draft genome sequences of 12 Agrobacterium strains isolated from coastal plants in Taiwan. Assemblies range from 4.95 to 5.42 Mb with >97.5% completeness. Genomic analyses reveal species identities and secretion system genes, providing resources for future research.