Shamsul Haque Prodhan

Dr. Shamsul Haque Prodhan

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 May 2023 in PLOS ONE
Verified
Journal Article
Open access
PDF file
ACAniqua Tasnim Chowdhury
Aniqua Tasnim Chowdhury
NHNazmul Hasan
Nazmul Hasan
FBFahmid H. Bhuiyan
Fahmid H. Bhuiyan
QIQamrul Islam
Qamrul Islam
RNRakib Wazed Nayon
Rakib Wazed Nayon
SPShamsul Haque Prodhan
Shamsul Haque Prodhan
Apyrase (APY) is a nucleoside triphosphate (NTP) diphosphohydrolase (NTPDase) which is a member of the superfamily of guanosine diphosphatase 1 (GDA1)—cluster of differentiation 39 (CD39) nucleoside phosphatase. Under various circumstances like stress, cell growth, the extracellular adenosine triphosphate (eATP) level increases, causing a detrimental influence on cells such as cell growth retardation, ROS production, NO burst, and apoptosis. Apyrase hydrolyses eATP accumulated in the extracellular membrane during stress, wounds, into adenosine diphosphate (ADP) and adenosine monophosphate (AMP) and regulates the stress-responsive pathway in plants. This study was designed for the identification, characterization, and for analysis of APY gene expression in Oryza sativa. This investigation discovered nine APYs in rice, including both endo- and ecto-apyrase. According to duplication event analysis, in the evolution of OsAPYs, a significant role is performed by segmental duplication. Their role in stress control, hormonal responsiveness, and the development of cells is supported by the corresponding cis-elements present in their promoter regions. According to expression profiling by RNA-seq data, the genes were expressed in various tissues. Upon exposure to a variety of biotic as well as abiotic stimuli, including anoxia, drought, submergence, alkali, heat, dehydration, salt, and cold, they showed a differential expression pattern. The expression analysis from the RT-qPCR data also showed expression under various abiotic stress conditions, comprising cold, salinity, cadmium, drought, submergence, and especially heat stress. This finding will pave the way for future in-vivo analysis, unveil the molecular mechanisms of APY genes in stress response, and contribute to the development of stress-tolerant rice varieties.

26 January 2023 in Gene
Verified
Journal Article
Closed access
BTBaan Munim Twaij
Baan Munim Twaij
LILiqaa Jameel Ibraheem
Liqaa Jameel Ibraheem
RARana Hadi H. Al-Shammari
Rana Hadi H. Al-Shammari
MHMahmudul Hasan
Mahmudul Hasan
RKRoksana Akter Khoko
Roksana Akter Khoko
MHMd. Nazmul Hasan
Md. Nazmul Hasan

26 October 2021 in Journal of Genetic Engineering and Biotechnology
Verified
Journal Article
Open access
PDF file
QIQamrul Islam
Qamrul Islam
MHMd. Nazmul Hasan
Md. Nazmul Hasan
HHHammadul Hoque
Hammadul Hoque
NJNurnabi Azad Jewel
Nurnabi Azad Jewel
FBFahmid Hossain Bhuiyan
Fahmid Hossain Bhuiyan
SPShamsul Haque Prodhan
Shamsul Haque Prodhan
Nitrogen and potassium are crucial supplements for plant development and growth. Plants can detect potassium and nitrate ions in soils and in like way, they modify root-to-shoot transport of these ions to adjust the conveyance among roots and shoots. Transcription factor MYB59 plays essential roles in numerous physiological processes inclusive of hormone response, abiotic stress tolerance, plant development, and metabolic regulation. In this study, we retrieved 56 MYB59 proteins from different plant species. Multiple sequence alignment, phylogenetic tree, conserved motif, chromosomal localization, and cis-regulatory elements of the retrieved sequences were analyzed. Gene structure, protein 3D structure, and DNA binding of OsMYB59 indica were also predicted. Finally, we characterized OsMYB59 and its function under low K+/NO3− conditions in Oryza sativa subsp. indica. Data analysis showed that MYB59s from various groups separated in terms of conserved functional domains and gene structure, where members of genus Oryza clustered together. Plants showed reduced height and yellowish appearance when grown on K+ and NO3− deficient medium. Quantitative real-time PCR uncovered that the OsMYB59 reacted to abiotic stresses where its expression was increased in BRRI dhan56 but decreased in other varieties on K+ deficient medium. In addition, OsMYB59 transcript level increased on NO3− deficient medium. Our results can help to explain the biological functions of indica rice MYB59 protein and gave a theoretical premise to additionally describe its biological roles in response to abiotic stresses particularly drought.

17 May 2022 in Biotechnology Reports
Verified
Journal Article
Open access
NHNazmul Hasan
Nazmul Hasan
FBFahmid H Bhuiyan
Fahmid H Bhuiyan
HHHammadul Hoque
Hammadul Hoque
NJNurnabi Azad Jewel
Nurnabi Azad Jewel
Md AshrafuzzamanMd Ashrafuzzaman
Md Ashrafuzzaman
SPShamsul Haque Prodhan
Shamsul Haque Prodhan
• Successful Agrobacterium-mediated transformation of indica Dhan28 and BRRI Dhan29 • Ectopic expression of the Na+/H+ exchanger 1 (VrNHX1) from Vigna radiata L. Wilczek in indica rice improves salinity tolerance. • Under 150 mM NaCl salinity stress, transgenic lines performed significantly better than wild type.

29 May 2024 in Biotechnology Reports
Verified
Journal Article
Open access
JRJeba Faizah Rahman
Jeba Faizah Rahman
HHHammadul Hoque
Hammadul Hoque
AJAbdullah -Al- Jubayer
Abdullah -Al- Jubayer
NJNurnabi Azad Jewel
Nurnabi Azad Jewel
NHNazmul Hasan
Nazmul Hasan
SPShamsul Haque Prodhan
Shamsul Haque Prodhan
• Nine members of Alfin-like (AL) transcription factor family found in Oryza sativa l. • Stress-responsive cis-elements suggest roles in stress control. • High expression of maximum OsAL genes found across diverse tissues and growth stages. • Elevated expression of maximum OsAL genes observed under different biotic and abiotic stresses. • Specifically, significant upregulation of OsAL1-3, 8, and 9 demonstrated under cold, submergence, and drought stress.

15 August 2022 in bioRxiv
Verified
Preprint
Open access
PDF file
ACAniqua Tasnim Chowdhury
Aniqua Tasnim Chowdhury
NHNazmul Hasan
Nazmul Hasan
FBFahmid H Bhuiyan
Fahmid H Bhuiyan
QIQamrul Islam
Qamrul Islam
RNRakib Wazed Nayon
Rakib Wazed Nayon
SPShamsul Haque Prodhan
Shamsul Haque Prodhan
Apyrase ( APY ) is a nucleoside triphosphate (NTP) diphosphohydrolase (NTPDase) which is a member of the superfamily of guanosine diphosphatase 1 (GDA1) - cluster of differentiation 39 (CD39) nucleoside phosphatase. Under various circumstances like stress, cell growth, the extracellular adenosine triphosphate (eATP) level increases, causing a detrimental influence on cells such as cell growth retardation, ROS production, NO burst, and apoptosis. Apyrase hydrolyses eATP accumulated in the extracellular membrane during stress, wounds, into adenosine diphosphate (ADP) and adenosine monophosphate (AMP) and regulates the stress- responsive pathway in plants. This study was designed for the identification, characterization, and for analysis of APY gene expression in Oryza sativa . This investigation discovered nine APY s in rice, including both endo- and ecto-apyrase. According to duplication event analysis, in the evolution of OsAPY s, a significant role is performed by segmental duplication. Their role in stress control, hormonal responsiveness, and the development of cells is supported by the corresponding cis-elements present in their promoter regions. According to expression profiling by RNA-seq data, the genes were expressed in various tissues. Upon exposure to a variety of biotic as well as abiotic stimuli, including anoxia, drought, submergence, alkali, heat, dehydration, salt, and cold, they showed a differential expression pattern. The expression analysis from the RT-qPCR data also showed expression under various abiotic stress conditions, comprising cold, salinity, cadmium, drought, submergence, and especially heat stress. This finding will pave the way for future in-vivo analysis, unveil the molecular mechanisms of APY genes in stress response, and contribute to the development of stress- tolerant rice varieties.