Krzysztof Jakub Pawlik

Dr. Krzysztof Jakub Pawlik

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Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 February 2023 in Chemical Society Reviews
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Journal Article
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MPMarta Piksa
Marta Piksa
CLCheng Lian
Cheng Lian
ISImogen C. Samuel
Imogen C. Samuel
KPKrzysztof Jakub Pawlik
Krzysztof Jakub Pawlik
ISIfor Samuel
Ifor Samuel
KMKatarzyna Matczyszyn
Katarzyna Matczyszyn
Antimicrobial photodynamic therapy (APDT) is a promising approach to fight the growing problem of antimicrobial resistance that threatens health care, food security and agriculture. APDT uses light to excite a light-activated chemical (photosensitiser), leading to the generation of reactive oxygen species (ROS). Many APDT studies confirm its efficacy in vitro and in vivo against bacteria, fungi, viruses and parasites. However, the development of the field is focused on exploring potential targets and developing new photosensitisers. The role of light, a crucial element for ROS production, has been neglected. What are the main parameters essential for effective photosensitiser activation? Does an optimal light radiant exposure exist? And finally, which light source is best? Many reports have described the promising antibacterial effects of APDT in vitro, however, its application in vivo, especially in clinical settings remains very limited. The restricted availability may partially be due to a lack of standard conditions or protocols, arising from the diversity of selected photosensitising agents (PS), variable testing conditions including light sources used for PS activation and methods of measuring anti-bacterial activity and their effectiveness in treating bacterial infections. We thus sought to systematically review and examine the evidence from existing studies on APDT associated with the light source used. We show how the reduction of pathogens depends on the light source applied, radiant exposure and irradiance of light used, and type of pathogen, and so critically appraise the current state of development of APDT and areas to be addressed in future studies. We anticipate that further standardisation of the experimental conditions will help the field advance, and suggest key optical and biological parameters that should be reported in all APDT studies. More in vivo and clinical studies are needed and are expected to be facilitated by advances in light sources, leading to APDT becoming a sustainable, alternative therapeutic option for bacterial and other microbial infections in the future.

2 August 2014 in Applied Microbiology and Biotechnology
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MKMagdalena Kotowska
Magdalena Kotowska
KPKrzysztof Jakub Pawlik
Krzysztof Jakub Pawlik
A large number of antibiotics and other industrially important microbial secondary metabolites are synthesized by polyketide synthases (PKSs) and nonribosomal peptide synthetases (NRPSs). These multienzymatic complexes provide an enormous flexibility in formation of diverse chemical structures from simple substrates, such as carboxylic acids and amino acids. Modular PKSs and NRPSs, often referred to as megasynthases, have brought about a special interest due to the colinearity between enzymatic domains in the proteins working as an “assembly line” and the chain elongation and modification steps. Extensive efforts toward modified compound biosynthesis by changing organization of PKS and NRPS domains in a combinatorial manner laid good grounds for rational design of new structures and their controllable biosynthesis as proposed by the synthetic biology approach. Despite undeniable progress made in this field, the yield of such “unnatural” natural products is often not satisfactory. Here, we focus on type II thioesterases (TEIIs)—discrete hydrolytic enzymes often encoded within PKS and NRPS gene clusters which can be used to enhance product yield. We review diverse roles of TEIIs (removal of aberrant residues blocking the megasynthase, participation in substrate selection, intermediate, and product release) and discuss their application in new biosynthetic systems utilizing PKS and NRPS parts.

29 September 2006 in Archives of Microbiology
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Journal Article
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KPKrzysztof Jakub Pawlik
Krzysztof Jakub Pawlik
MKMagdalena Kotowska
Magdalena Kotowska
KCKeith F. Chater
Keith F. Chater
KKKatarzyna Kuczek
Katarzyna Kuczek
ETEriko Takano
Eriko Takano

1 May 2015 in Biosensors and Bioelectronics
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Journal Article
Closed access
EBEwa Brzozowska
Ewa Brzozowska
Mateusz SmietanaMateusz Smietana
Mateusz Smietana
MKMarcin Koba
Marcin Koba
Sabina GórskaSabina Górska
Sabina Górska
KPKrzysztof Jakub Pawlik
Krzysztof Jakub Pawlik
WBWojtek J. Bock
Wojtek J. Bock

27 June 2019 in Applied Microbiology and Biotechnology
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Journal Article
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BBBartosz Bednarz
Bartosz Bednarz
MKMagdalena Kotowska
Magdalena Kotowska
KPKrzysztof Jakub Pawlik
Krzysztof Jakub Pawlik
Despite being a yellow pigment visible to the human eye, coelimycin (CPK) remained to be an undiscovered secondary metabolite for over 50 years of Streptomyces research. Although the function of this polyketide is still unclear, we now know that its “cryptic” nature is attributed to a very complex and precise mechanism of cpk gene cluster regulation in the model actinomycete S. coelicolor A3(2). It responds to the stringent culture density and timing of the transition phase by the quorum-sensing butanolide system and to the specific nutrient availability/uptake signals mediated by the global (pleiotropic) regulators; many of which are two-component signal transduction systems. The final effectors of this regulation cascade are predicted to be two cluster-situated Streptomyces antibiotic regulatory proteins (SARPs) putatively activating the expression of type I polyketide synthase (PKS I) genes. After its synthesis, unstable, colorless antibiotic coelimycin A reacts with specific compounds in the medium losing its antibacterial properties and giving rise to yellow coelimycins P1 and P2. Here we review the current knowledge on coelimycin synthesis regulation in Streptomyces coelicolor A3(2). We focus on the regulatory feedback loop which interconnects the butanolide system with other cpk cluster-situated regulators. We also present the effects exerted on cpk genes expression by the global, pleiotropic regulators, and the regulatory connections between cpk and other biosynthetic gene clusters.

28 September 2015 in Physical Chemistry Chemical Physics
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Journal Article
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MKMagdalena Klekotko
Magdalena Klekotko
KMKatarzyna Matczyszyn
Katarzyna Matczyszyn
JSJakub Siednienko
Jakub Siednienko
Joanna Olesiak-BanskaJoanna Olesiak-Banska
Joanna Olesiak-Banska
KPKrzysztof Jakub Pawlik
Krzysztof Jakub Pawlik
Marek SamocMarek Samoc
Marek Samoc
We report here a “green” approach for the synthesis of gold nanoparticles (GNPs) in which the Mentha piperita extract was applied for the bioreduction of chloroauric acid and the stabilization of the formed nanostructures. The obtained GNPs were characterized by UV-Vis absorption spectroscopy and transmission electron microscopy (TEM). The reduction of gold ions with the plant extract leads to the production of nanoparticles with various shapes (spherical, triangular and hexagonal) and sizes (from 10 to 300 nm). The kinetics of the reaction was monitored and various conditions of the synthesis were investigated. As a result, we established protocols optimized towards the synthesis of nanospheres and nanoprisms of gold. The cytotoxic effect of the obtained gold nanoparticles was studied by performing MTT assay, which showed lower cytotoxicity of the biosynthesized GNPs compared to gold nanorods synthesized using the usual seed-mediated growth. The results suggest that the synthesis using plant extracts may be a useful method to produce gold nanostructures for various biological and medical applications.