Increased agricultural activities driven by rising food demand have led to environmental problems mostly arising from the high levels of external inputs and resources that are required. Additionally, environmental changes, such as global warming, can lead to various biotic and abiotic stresses, which have negative impacts on crop production. Numerous solutions and agricultural strategies have been introduced to overcome these problems. One of the ways to improve plant production as well as to increase resistance towards biotic and abiotic stresses is by utilizing beneficial microbes as soil inoculants. A better understanding of the ability of Trichoderma to enhance crop production and the mechanisms that are involved are important for deriving maximum benefits from their exploitation. These versatile fungi hold great promise for the development of viable commercial products that can be used widely in agriculture for increasing crop productivity in a more sustainable way. Many previous reviews on Trichoderma have tended to focus on the mechanisms of Trichoderma in enhancing plant growth and yield. This current review discusses the sustainability aspect of using Trichoderma as plant growth regulators, the impact on plant growth and yield as well as their effects in regulating biotic and abiotic stresses.

Rice, the main staple food for about half of the world’s population, has had the growth of its production stagnate in the last two decades. One of the ways to further improve rice production is to enhance the associations between rice plants and the microbiome that exists around, on, and inside the plant. This article reviews recent developments in understanding how microorganisms exert positive influences on plant growth, production, and health, focusing particularly on rice. A variety of microbial species and taxa reside in the rhizosphere and the phyllosphere of plants and also have multiple roles as symbiotic endophytes while living within plant tissues and even cells. They alter the morphology of host plants, enhance their growth, health, and yield, and reduce their vulnerability to biotic and abiotic stresses. The findings of both agronomic and molecular analysis show ways in which microorganisms regulate the growth, physiological traits, and molecular signaling within rice plants. However, many significant scientific questions remain to be resolved. Advancements in high-throughput multi-omics technologies can be used to elucidate mechanisms involved in microbial–rice plant associations. Prospectively, the use of microbial inoculants and associated approaches offers some new, cost-effective, and more eco-friendly practices for increasing rice production.

Pantoea species are gram-negative bacteria from the Enterobacteriaceae family, generally associated with plants, either as epiphytes or as pathogens. In the last decade, Pantoea species are being regarded as re-emerging pathogens that are the causal agents of various diseases in rice plants. Inherently, they are also known to be opportunistic plant symbionts having the capacity to enhance systemic resistance and increase the yield of rice plants. It is unclear how they can express both beneficial and pathogenic traits, and what factors influence and determine the outcome of a particular Pantoea–rice plant interaction. This review aims to compare the characteristics of rice plant-beneficial and pathogenic strains belonging to the Pantoea species and gain new insights, enabling distinction among the two types of plant–microbe interactions.

Trichoderma yunnanense strain TM10 was isolated from rhizosphere soil of rice plants cultivated under system of rice intensification (SRI) practises in West Java, Indonesia. It exhibits significant potential as a plant growth promoter and biocontrol agent in rice plants. Although this strain has shown promise in promoting plant growth and suppressing phytopathogens under in vitro and in planta conditions, there is still a lack of genomic data to elucidate the molecular mechanisms underlying its plant growth-promoting and biocontrol capabilities. This study reports the whole genome sequence of T. yunnanense strain TM10. The genome of the fungus was sequenced using the MGI DNBSEQ-G400 high-throughput sequencing platform. The assembled genome of T. yunnanense strain TM10 was approximately 36 Mbp in length, comprising 385 contigs with a GC content of 48 % and a sequencing coverage of 43.8×. This genomic data provides a foundation for harnessing the plant growth-promoting and biocontrol potential of this strain. The complete genome sequence has been deposited at the National Center for Biotechnology Information (NCBI) under Bioproject accession number PRJNA1181959, BioSample ID SAMN44575400, and genome accession number JBIYZQ000000000. These data are valuable for further research into the biotechnological potential of this strain and for exploring the molecular mechanisms underlying its plant growth-promoting and biocontrol activities.