Network intrusion detection is an important technology in national cyberspace security strategy and has become a research hotspot in various cyberspace security issues in recent years. The development of effective and efficient intelligent network intrusion detection methods using advanced machine learning algorithms is of great importance for defending against various network intrusions in complex network environments. In this study, a network intrusion detection method based on decision tree twin support vector machine and hierarchical clustering, named HC-DTTWSVM, is proposed, which can effectively detect different categories of network intrusion. First, the hierarchical clustering algorithm is applied to construct the decision tree for network traffic data, where the bottom-up merging approach is used to maximize the separation of the upper nodes of the decision tree, which reduces the error accumulation in the construction of the decision tree. Then, twin support vector machines are embedded in the constructed decision tree to implement the network intrusion detection model, which can effectively detect the network intrusion category in a top-down manner. The detection performance of the proposed HC-DTTWSVM method is evaluated on NSL-KDD and UNSW-NB15 intrusion detection benchmark datasets. Experimental results show that HC-DTTWSVM can effectively detect different categories of network intrusion and achieves comparable detection performance compared to some of the recently proposed network intrusion detection methods.
Three-dimensional (3D) reconstruction in single-particle cryo-electron microscopy (cryo-EM) is a significant technique for recovering the 3D structure of proteins or other biological macromolecules from their two-dimensional (2D) noisy projection images taken from unknown random directions. Class averaging in single-particle cryo-EM is an important procedure for producing high-quality initial 3D structures, where image alignment is a fundamental step. In this paper, an efficient image alignment algorithm using 2D interpolation in the frequency domain of images is proposed to improve the estimation accuracy of alignment parameters of rotation angles and translational shifts between the two projection images, which can obtain subpixel and subangle accuracy. The proposed algorithm firstly uses the Fourier transform of two projection images to calculate a discrete cross-correlation matrix and then performs the 2D interpolation around the maximum value in the cross-correlation matrix. The alignment parameters are directly determined according to the position of the maximum value in the cross-correlation matrix after interpolation. Furthermore, the proposed image alignment algorithm and a spectral clustering algorithm are used to compute class averages for single-particle 3D reconstruction. The proposed image alignment algorithm is firstly tested on a Lena image and two cryo-EM datasets. Results show that the proposed image alignment algorithm can estimate the alignment parameters accurately and efficiently. The proposed method is also used to reconstruct preliminary 3D structures from a simulated cryo-EM dataset and a real cryo-EM dataset and to compare them with RELION. Experimental results show that the proposed method can obtain more high-quality class averages than RELION and can obtain higher reconstruction resolution than RELION even without iteration.
9 October 2024 in IEEE/ACM Transactions on Computational Biology and Bioinformatics
Three-dimensional (3D) reconstruction in single-particle cryo-electron microscopy (cryo-EM) is a critical technique for recovering and studying the fine 3D structure of proteins and other biological macromolecules, where the primary issue is to determine the orientations of projection images with high levels of noise. This paper proposes a method to determine the orientations of cryo-EM projection images using reliable common lines and spherical embeddings. First, the reliability of common lines between projection images is evaluated using a weighted voting algorithm based on an iterative improvement technique and binarized weighting. Then, the reliable common lines are used to calculate the normal vectors and local X-axis vectors of projection images after two spherical embeddings. Finally, the orientations of projection images are determined by aligning the results of the two spherical embeddings using an orthogonal constraint. Experimental results on both synthetic and real cryo-EM projection image datasets demonstrate that the proposed method can achieve higher accuracy in estimating the orientations of projection images and higher resolution in reconstructing preliminary 3D structures than some common line-based methods, indicating that the proposed method is effective in single-particle cryo-EM 3D reconstruction.
Objective . Cephalometric alandmark localization is of great clinical significance in diagnosing and treating patients with dental-maxillofacial deformities. Domain shifts across clinical centers significantly hinder model generalizability, causing existing methods to struggle with accurate and robust anatomical landmark localization due to insufficient alignment of high-level semantic features across domains. We aim to improve the cross-domain generalizability of cephalometric landmark detection by aligning semantic features and enhancing output resolution under an unsupervised domain adaptation (UDA) setting. Approach . In this paper, we propose bi-Level alignment with super-resolution head, an effective framework for precise and robust anatomical landmark detection under UDA. Specifically, we employ adaptive instance normalization to generate target-style images while preserving original anatomical spatial structure at the input level. At the output level, a Mean–Teacher framework leverages high-quality pseudo-labels from the teacher model to guide the student model’s learning. Additionally, a lightweight super-resolution head enables the generation of high-resolution heatmaps from the multi-scale feature maps and the low-resolution heatmaps, reducing quantization errors with low computational cost. Results . The proposed method achieved a mean localization error of 1.64 mm, a successful detection rate of 72.68% within the clinically acceptable threshold of 2 mm, and an average classification accuracy of 81.81% for anatomical types. Significance . Extensive experiments on public cephalometric datasets demonstrate superiority over state-of-the-art UDA methods, highlighting its potential for clinical applications in cephalometric analysis and orthodontic surgery planning.
Heterogeneous three-dimensional (3D) reconstruction in single-particle cryo-electron microscopy (cryo-EM) is an important but very challenging technique for recovering the conformational heterogeneity of flexible biological macromolecules such as proteins in different functional states. Heterogeneous projection image classification is a feasible solution to solve the structural heterogeneity problem in single-particle cryo-EM. The majority of heterogeneous projection image classification methods are developed using supervised learning technology or require a large amount of a priori knowledge, such as the orientations or common lines of the projection images, which leads to certain limitations in their practical applications. In this paper, an unsupervised heterogeneous cryo-EM projection image classification algorithm based on autoencoders is proposed, which only needs to know the number of heterogeneous 3D structures in the dataset and does not require any labeling information of the projection images or other a priori knowledge. A simple autoencoder with multi-layer perceptrons trained in iterative mode and a complex autoencoder with residual networks trained in one-pass learning mode are implemented to convert heterogeneous projection images into latent variables. The extracted high-dimensional features are reduced to two dimensions using the uniform manifold approximation and projection dimensionality reduction algorithm, and then clustered using the spectral clustering algorithm. The proposed algorithm is applied to two heterogeneous cryo-EM datasets for heterogeneous 3D reconstruction. Experimental results show that the proposed algorithm can effectively extract category features of heterogeneous projection images and achieve high classification and reconstruction accuracy, indicating that the proposed algorithm is effective for heterogeneous 3D reconstruction in single-particle cryo-EM.