Yukinori Nishigami

Dr. Yukinori Nishigami

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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 March 2018 in Proceedings of the National Academy of Sciences
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Journal Article
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TOTakuya Ohmura
Takuya Ohmura
YNYukinori Nishigami
Yukinori Nishigami
ATAtsushi Taniguchi
Atsushi Taniguchi
SNShigenori Nonaka
Shigenori Nonaka
JMJunichi Manabe
Junichi Manabe
MIMasatoshi Ichikawa
Masatoshi Ichikawa
Significance: Single-celled microorganisms are important in ecosystems, and their behaviors impact the Earth’s environments. To survive in harsh environments, these organisms frequently act as though exercising discretion. How do they achieve such intelligent behaviors? In this work, we focused on the accumulation of ciliates on solid/fluid interfaces, where they can obtain sufficient nutrients and a stable environment. This phenomenon is not described in the standard hydrodynamics of microswimmers. Our experiment and simulation revealed that simple principles, the anisotropic shape of the cell and the mechanosensing nature of cilia, induce the accumulation of ciliates on solid/fluid interfaces. The contribution of our work is that a simple response of the cellular apparatus and fluid dynamics explain the apparently clever behavior of ciliates.

22 October 2021 in Science Advances
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Journal Article
Open access
TOTakuya Ohmura
Takuya Ohmura
YNYukinori Nishigami
Yukinori Nishigami
ATAtsushi Taniguchi
Atsushi Taniguchi
SNShigenori Nonaka
Shigenori Nonaka
TTakuji Ishikawa
Takuji Ishikawa
MIMasatoshi Ichikawa
Masatoshi Ichikawa
Kinesthetic sensing of cilia results in upstream motility for Tetrahymena pyriformis , a typical freshwater microorganism.

5 August 2013 in PLOS ONE
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Journal Article
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YNYukinori Nishigami
Yukinori Nishigami
MIMasatoshi Ichikawa
Masatoshi Ichikawa
TKToshiya Kazama
Toshiya Kazama
RKRyo Kobayashi
Ryo Kobayashi
TSTeruo Shimmen
Teruo Shimmen
SSSeiji Sonobe
Seiji Sonobe
Amoeboid locomotion is one of the typical modes of biological cell migration. Cytoplasmic sol–gel conversion of an actomyosin system is thought to play an important role in locomotion. However, the mechanisms underlying sol–gel conversion, including trigger, signal, and regulating factors, remain unclear. We developed a novel model system in which an actomyosin fraction moves like an amoeba in a cytoplasmic extract. Rheological study of this model system revealed that the actomyosin fraction exhibits shear banding: the sol–gel state of actomyosin can be regulated by shear rate or mechanical force. Furthermore, study of the living cell indicated that the shear-banding property also causes sol–gel conversion with the same order of magnitude as that of shear rate. Our results suggest that the inherent sol–gel transition property plays an essential role in the self-regulation of autonomous translational motion in amoeba.

4 July 2018 in Communicative & Integrative Biology
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Journal Article
Open access
YNYukinori Nishigami
Yukinori Nishigami
TOTakuya Ohmura
Takuya Ohmura
ATAtsushi Taniguchi
Atsushi Taniguchi
SNShigenori Nonaka
Shigenori Nonaka
JMJunichi Manabe
Junichi Manabe
MIMasatoshi Ichikawa
Masatoshi Ichikawa
Some types of ciliates accumulate on solid/fluid interfaces. This behavior is advantageous to survival in nature due to the presence of sufficient nutrition and stable environments. Recently, the accumulating mechanisms of Tetrahymena pyriformis at the interface were investigated. The synergy of the ellipsoidal shape of the cell body and the mechanosensing feature of the cilia allow for cells to slide on interfaces, and the sliding behavior leads to cell accumulation on the interfaces. Here, to examine the generality of the sliding behavior of ciliates, we characterized the behavior of Paramecium caudatum, which is a commonly studied ciliate. Our experimental and numerical results confirmed that P. caudatum also slid on the solid/fluid interface by using the same mechanism as T. pyriformis. In addition, we evaluated the effects of cellular ellipticity on their behaviors near the wall with a phase diagram produced via numerical simulation.

1 November 2022 in Frontiers in Cell and Developmental Biology
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Journal Article
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SESyun Echigoya
Syun Echigoya
KSKatsuhiko Sato
Katsuhiko Sato
OKOsamu Kishida
Osamu Kishida
TNToshiyuki Nakagaki
Toshiyuki Nakagaki
YNYukinori Nishigami
Yukinori Nishigami
Protists ubiquitously live in nature and play key roles in the food web chain. Their habitats consist of various geometrical structures, such as porous media and rigid surfaces, affecting their motilities. A kind of protist, Stentor coeruleus, exhibits free swimming and adhering for feeding. Under environmental and culture conditions, these organisms are often found in sediments with complex geometries. The determination of anchoring location is essential for their lives. However, the factors that induce the behavioral transition from swimming to adhering are still unknown. In this study, we quantitatively characterized the behavioral transitions in S. coeruleus and observed the behavior in a chamber with dead ends made by a simple structure mimicking the environmental structures. As a result, the cell adheres and feeds in narrow spaces between the structure and the chamber wall. It may be reasonable for the organism to hide itself from predators and capture prey in these spaces. The behavioral strategy for the exploration and exploitation of spaces with a wide variety of geometries in their habitats is discussed.

12 January 2016 in Scientific Reports
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Journal Article
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YNYukinori Nishigami
Yukinori Nishigami
HIHiroaki Ito
Hiroaki Ito
SSSeiji Sonobe
Seiji Sonobe
MIMasatoshi Ichikawa
Masatoshi Ichikawa
Active force generation in living organisms, which is mainly involved in actin cytoskeleton and myosin molecular motors, plays a crucial role in various biological processes. Although the contractile properties of actomyosin have been extensively investigated, their dynamic contribution to a deformable membrane remains unclear because of the cellular complexities and the difficulties associated with in vitro reconstitution. Here, by overcoming these experimental difficulties, we demonstrate the dynamic deformation of a reconstituted lipid interface coupled with self-organized structure of contractile actomyosin. Therein, the lipid interface repeatedly oscillates without any remarkable periods. The oscillatory deformation of the interface is caused by the aster-like three-dimensional hierarchical structure of actomyosin inside the droplet, which is revealed that the oscillation occurs stochastically as a Poisson process.