We have investigated the effect of eddies (cold and warm eddies, CEs and WEs) on the nutrient supply to the euphotic zone and the organic carbon export from the euphotic zone to deeper parts of the water column in the northern South China Sea. Besides basic hydrographic and biogeochemical parameters, the flux of particulate organic carbon (POC), a critical index of the strength of the oceanic biological pump, was also measured at several locations within two CEs and one WE using floating sediment traps deployed below the euphotic zone. The POC flux associated with the CEs (85 ± 55 mg-C m⁻² d⁻¹) was significantly higher than that associated with the WE (20 ± 7 mg-C m⁻² d⁻¹). This was related to differences in the density structure of the water column between the two types of eddies. Within the core of the WE, downwelling created intense stratification which hindered the upward mixing of nutrients and favored the growth of small phytoplankton species. Near the periphery of the WE, nutrient replenishment from below did take place, but only to a limited extent. By far the strongest upwelling was associated with the CEs, bringing nutrients into the lower portion (∼50 m) of the euphotic zone and fueling the growth of larger-cell phytoplankton such as centric diatoms (e.g., Chaetoceros, Coscinodiscus) and dinoflagellates (e.g., Ceratium). A significant finding that emerged from all the results was the positive relationship between the phytoplankton carbon content in the subsurface layer (where the chlorophyll a maximum occurs) and the POC flux to the deep sea.

To understand the biogeochemical response to internal waves in the deep basin of the northern South China Sea (NSCS), particulate organic carbon (POC) export fluxes were quantified for the first time during the passage of large internal waves using drifting sediment traps attached with hydrographic sensors. Results revealed large variations in temperature, nitrate and chlorophyll a (Chl a) concentrations during and after internal waves, suggesting that cold nutrient-replete waters may be brought to the euphotic zone in the dissipation zone during and after the passage of internal wave packets, resulted in phytoplankton flourished. Most importantly, POC export fluxes (110.9 ± 10.7 mg C m⁻² d⁻¹) were significantly enhanced after internal waves compared to non-internal wave area (32.6–73.0 mg C m⁻² d⁻¹) in the NSCS. Such elevated POC fluxes may be induced by downward flourished biogenic particles, particle aggregation or converged particles from mixed layer triggered by internal waves.

This study analyzes the observed subtidal currents, 1/12° global HYCOM model results, and the observed time series to interpret seasonal and interannual patterns in the behavior of the Kuroshio intrusion around the Luzon Strait (LS). The observations include current measurements conducted at mooring station N2 (20°40.441′N, 120°38.324′E) from 7 July 2009 to 31 March 2011, surface geostrophic currents derived from the merged absolute dynamic topography, and the trajectory of an Argo float during the winter of 2010–2011. Results from mooring station N2 confirmed the seasonal changes in the Kuroshio intrusion and the variation of the Kuroshio intrusion during El Niño event from July 2009 to April 2010 and La Niña even from June 2010 to March 2011. The strongest Kuroshio intrusion occurs in the winter, with successively weaker currents in spring, autumn, and summer. Comparison of relative differences (Δ_max (z)) in the maximum absolute value of monthly average zonal velocity components |U_max (z)| showed that the Kuroshio intrusion was stronger during the 2009–2010 winter (El Niño) than the 2010–2011 winter (La Niña). Furthermore, the relative differences (Δ_max (z)) in deeper layers exceed those of the surface layer. Circulation patterns in surface geostrophic currents and the Argo float trajectory confirmed the results of mooring station N2. The Kuroshio intrusion velocity variation modeled using the 1/12° global HYCOM model resembled the observation on both seasonal to interannual scales. Modeled variation in the zonal mean velocity anomaly was also consistent with Niño3, Niño4, and North Equatorial Current (NEC) bifurcation latitude indices, indicating concurrent impacts of the ENSO influence. Monsoon winds strongly affect the seasonal variation while the weak upstream Kuroshio transport induced by El Niño, strongly affects the interannual variation, such as 2009–2010 winter. In 2010–2011 winter, the impact of winter monsoon forcing still exists in the LS. However, the stronger upstream Kuroshio transport during this period did not allow the Kuroshio to penetrate into the LS deeply. This explains why the 2009–2010 winter Kuroshio intrusion (El Niño event) was stronger than that of the 2010–2011 winter (La Niña event).