Jose Ramon Botella

Prof. Dr. Jose Ramon Botella


Research Focus & Metrics

Academic Career Length

41Years (1986-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 November 2017 in PLOS Biology
Verified
Journal Article
Open access
PDF file
YZYiping Zou
Yiping Zou
MMMichael Glenn Mason
Michael Glenn Mason
Yuling  WangYuling Wang
Yuling Wang
EWEugene Wee
Eugene Wee
CTConny Turni
Conny Turni
JBJose Ramon Botella
Jose Ramon Botella
Nucleic acid amplification is a powerful molecular biology tool, although its use outside the modern laboratory environment is limited due to the relatively cumbersome methods required to extract nucleic acids from biological samples. To address this issue, we investigated a variety of materials for their suitability for nucleic acid capture and purification. We report here that untreated cellulose-based paper can rapidly capture nucleic acids within seconds and retain them during a single washing step, while contaminants present in complex biological samples are quickly removed. Building on this knowledge, we have successfully created an equipment-free nucleic acid extraction dipstick methodology that can obtain amplification-ready DNA and RNA from plants, animals, and microbes from difficult biological samples such as blood and leaves from adult trees in less than 30 seconds. The simplicity and speed of this method as well as the low cost and availability of suitable materials (e.g., common paper towelling), means that nucleic acid extraction is now more accessible and affordable for researchers and the broader community. Furthermore, when combined with recent advancements in isothermal amplification and naked eye DNA visualization techniques, the dipstick extraction technology makes performing molecular diagnostic assays achievable in limited resource settings including university and high school classrooms, field-based environments, and developing countries. Nucleic acid amplification has proven to be indispensable in laboratories around the world for a myriad of applications from diagnostics to genotyping. The first step in any application aiming to amplify DNA or RNA is the extraction of nucleic acids from a complex biological sample; a task traditionally requiring specialised equipment, trained technicians, and multiple liquid handling steps. It is this complexity of current nucleic acid isolation methods that limit the use of many DNA amplification technologies outside of the modern laboratory environment. Therefore, in this study, we investigated new materials and approaches to simplify nucleic acid extraction. We found that cellulose-based filter paper can be used to rapidly bind nucleic acids, retain them during a short washing step to remove contaminants, and then elute them directly into the amplification reaction. We then adapted the cellulose filter to create a dipstick that can be used to purify nucleic acids from a wide range of plant, animal, and microbe samples in less than 30 seconds without the need for any specialised equipment. The speed and simplicity of our method makes it ideally suited for nucleic acid amplification-based applications both within and outside the laboratory, including limited resource settings such as remote field sites, developing countries, and teaching institutions.

1 March 2013 in Open Biology
Verified
Journal Article
Open access
DUDaisuke Urano
Daisuke Urano
JCJin-Gui Chen
Jin-Gui Chen
JBJose Ramon Botella
Jose Ramon Botella
AJAlan M. Jones
Alan M. Jones
In animals, heterotrimeric G proteins, comprising α-, β-and γ-subunits, perceive extracellular stimuli through cell surface receptors, and transmit signals to ion channels, enzymes and other effector proteins to affect numerous cellular behaviours. In plants, G proteins have structural similarities to the corresponding molecules in animals but transmit signals by atypical mechanisms and effector proteins to control growth, cell proliferation, defence, stomate movements, channel regulation, sugar sensing and some hormonal responses. In this review, we summarize the current knowledge on the molecular regulation of plant G proteins, their effectors and the physiological functions studied mainly in two model organisms: Arabidopsis thaliana and rice ( Oryza sativa ). We also look at recent progress on structural analyses, systems biology and evolutionary studies.

1 July 2017 in Molecular Plant
Verified
Journal Article
Closed access
MWMugui Wang
Mugui Wang
YLYuming Lu
Yuming Lu
JBJose Ramon Botella
Jose Ramon Botella
YMYanfei Mao
Yanfei Mao
KHKai Hua
Kai Hua
JZJian-Kang Zhu
Jian-Kang Zhu

3 August 2017 in Frontiers in Plant Science
Verified
Journal Article
Open access
WGWei Gao
Wei Gao
LLLu Long
Lu Long
XTXinquan Tian
Xinquan Tian
FXFuchun Xu
Fuchun Xu
JLJi Liu
Ji Liu
CSChunpeng Song
Chunpeng Song
Genome editing is an important tool for gene functional studies as well as crop improvement. The recent development of the CRISPR/Cas9 system using single guide RNA molecules (sgRNAs) to direct precise double strand breaks in the genome has the potential to revolutionize agriculture. Unfortunately, not all sgRNAs are equally efficient and it is difficult to predict their efficiency by bioinformatics. In crops such as cotton (Gossypium hirsutum L.), with labor-intensive and lengthy transformation procedures, it is essential to minimize the risk of using an ineffective sgRNA that could result in the production of transgenic plants without the desired CRISPR-induced mutations. In this study, we have developed a fast and efficient method to validate the functionality of sgRNAs in cotton using a transient expression system. We have used this method to validate target sites for three different genes GhPDS, GhCLA1, and GhEF1 and analyzed the nature of the CRISPR/Cas9-induced mutations. In our experiments, the most frequent type of mutations observed in cotton cotyledons were deletions (~64%). We prove that the CRISPR/Cas9 system can effectively produce mutations in homeologous cotton genes, an important requisite in this allotetraploid crop. We also show that multiple gene targeting can be achieved in cotton with the simultaneous expression of several sgRNAs and have generated mutations in GhPDS and GhEF1 at two target sites. Additionally, we have used the CRISPR/Cas9 system to produce targeted gene fragment deletions in the GhPDS locus. Finally, we obtained transgenic cotton plants containing CRISPR/Cas9-induced gene editing mutations in the GhCLA1 gene. The mutation efficiency was very high, with 80.6% of the transgenic lines containing mutations in the GhCLA1 target site resulting in an intense albino phenotype due to interference with chloroplast biogenesis.

6 December 2017 in Journal of Integrative Plant Biology
Verified
Journal Article
Closed access
PDF file
JZJinshan Zhang
Jinshan Zhang
HZHui Zhang
Hui Zhang
JBJose Ramon Botella
Jose Ramon Botella
JZJian-Kang Zhu
Jian-Kang Zhu

10 December 2015 in Plant Cell Reports
Verified
Journal Article
Closed access
PDF file
ZZZhengjing Zhang
Zhengjing Zhang
YMYanfei Mao
Yanfei Mao
SHSi Ha
Si Ha
WLWenshan Liu
Wenshan Liu
JBJose Ramon Botella
Jose Ramon Botella
JZJian-Kang Zhu
Jian-Kang Zhu