Vladimir N. Sil’nikov

Prof. Vladimir N. Sil’nikov

orcid

Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
8 April 2020 in Molecules
Verified
Journal Article
Open access
PDF file
SDSergey Dobrynin
Sergey Dobrynin
SKSergei Kutseikin
Sergei Kutseikin
DMDenis Morozov
Denis Morozov
OKOlesya Krumkacheva
Olesya Krumkacheva
ASAnna Spitsyna
Anna Spitsyna
Alexey ChubarovAlexey Chubarov
Alexey Chubarov
Four albumin-nitroxide conjugates were prepared and tested as metal-free organic radical contrast agents (ORCAs) for magnetic resonance imaging (MRI). Each human serum albumin (HSA) carrier bears multiple nitroxides conjugated via homocysteine thiolactones. These molecular conjugates retain important physical and biological properties of their HSA component, and the resistance of their nitroxide groups to bioreduction was retained or enhanced. The relaxivities are similar for these four conjugates and are much greater than those of their individual components: the HSA or the small nitroxide molecules. This new family of conjugates has excellent prospects for optimization as ORCAs.

22 November 2019 in Molecules
Verified
Journal Article
Open access
PDF file
MMMariya Meschaninova
Mariya Meschaninova
DNDarya Novopashina
Darya Novopashina
OSOlga A. Semikolenova
Olga A. Semikolenova
VSVladimir N. Sil’nikov
Vladimir N. Sil’nikov
AVAlya Venyaminova
Alya Venyaminova
A novel and convenient approach for the solid-phase 5′-functionalization of oligonucleotides is proposed in this article. The approach is based on the activation of free 5′-hydroxyl of polymer support-bound protected oligonucleotides by N,N′-disuccinimidyl carbonate followed by interaction with amino-containing ligands. Novel amino-containing derivatives of closo-dodecaborate, estrone, cholesterol, and α-tocopherol were specially prepared. A wide range of oligonucleotide conjugates bearing closo-dodecaborate, short peptide, pyrene, lipophilic residues (cholesterol, α-tocopherol, folate, estrone), aliphatic diamines, and propargylamine were synthesized and characterized to demonstrate the versatility of the approach. The developed method is suitable for the conjugate synthesis of oligonucleotides of different types (ribo-, deoxyribo-, 2′-O-methylribo-, and others).

18 January 2019 in Polymers
Verified
Journal Article
Open access
PDF file
LALarisa Antonova
Larisa Antonova
VSVladimir N. Sil’nikov
Vladimir N. Sil’nikov
VSViktoriia Sevostianova
Viktoriia Sevostianova
Arseniy E YuzhalinArseniy E Yuzhalin
Arseniy E Yuzhalin
LKLyudmila S. Koroleva
Lyudmila S. Koroleva
LBLeonid Barbarash
Leonid Barbarash
Modification with Arg-Gly-Asp (RGD) peptides is a promising approach to improve biocompatibility of small-calibre vascular grafts but it is unknown how different RGD sequence composition impacts graft performance. Here we manufactured 1.5 mm poly(3-hydroxybutyrate-co-3-hydroxyvalerate)/poly(ε-caprolactone) grafts modified by distinct linear or cyclic RGD peptides immobilized by short or long amine linker arms. Modified vascular prostheses were tested in vitro to assess their mechanical properties, hemocompatibility, thrombogenicity and endothelialisation. We also implanted these grafts into rat abdominal aortas with the following histological examination at 1 and 3 months to evaluate their primary patency, cellular composition and detect possible calcification. Our results demonstrated that all modes of RGD modification reduce ultimate tensile strength of the grafts. Modification of prostheses does not cause haemolysis upon the contact with modified grafts, yet all the RGD-treated grafts display a tendency to promote platelet aggregation in comparison with unmodified counterparts. In vivo findings identify that cyclic Arg-Gly-Asp-Phe-Lys peptide in combination with trioxa-1,13-tridecanediamine linker group substantially improve graft biocompatibility. To conclude, here we for the first time compared synthetic small-diameter vascular prostheses with different modes of RGD modification. We suggest our graft modification regimen as enhancing graft performance and thus recommend it for future use in tissue engineering.

13 January 2021 in Biomedicines
Verified
Journal Article
Open access
PDF file
TPTatyana Popova
Tatyana Popova
IPInna Pyshnaya
Inna Pyshnaya
OZOlga Zakharova
Olga Zakharova
AAAndrey Akulov
Andrey Akulov
OSOleg B. Shevelev
Oleg B. Shevelev
TGTatyana S. Godovikova
Tatyana S. Godovikova
Multifunctional gold nanoparticles (AuNPs) may serve as a scaffold to integrate diagnostic and therapeutic functions into one theranostic system, thereby simultaneously facilitating diagnosis and therapy and monitoring therapeutic responses. Herein, albumin-AuNP theranostic agents have been obtained by conjugation of an anticancer nucleotide trifluorothymidine (TFT) or a boron-neutron capture therapy drug undecahydro-closo-dodecaborate (B12H12) to bimodal human serum albumin (HSA) followed by reacting of the albumin conjugates with AuNPs. In vitro studies have revealed a stronger cytotoxicity by the AuNPs decorated with the TFT-tagged bimodal HSA than by the boronated albumin conjugates. Despite long circulation time, lack of the significant accumulation in the tumor was observed for the AuNP theranostic conjugates. Our unique labelling strategy allows for monitoring of spatial distribution of the AuNPs theranostic in vivo in real time with high sensitivity, thus reducing the number of animals required for testing and optimizing new nanosystems as chemotherapeutic agents and boron-neutron capture therapy drug candidates.

1 May 2015 in European Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
LYLyubov Yarinich
Lyubov Yarinich
EBEkaterina A. Burakova
Ekaterina A. Burakova
BZBoris Zakharov
Boris Zakharov
Elena BoldyrevaElena Boldyreva
Elena Boldyreva
IBIrina N. Babkina
Irina N. Babkina
VSVladimir N. Sil’nikov
Vladimir N. Sil’nikov

Verified
Journal Article
Open access
PDF file
YSYuliya V. Sherstyuk
Yuliya V. Sherstyuk
NINikita Ivanisenko
Nikita Ivanisenko
AZAlexandra Zakharenko
Alexandra Zakharenko
MSMaria V. Sukhanova
Maria V. Sukhanova
RPRoman Peshkov
Roman Peshkov
TATatyana Abramova
Tatyana Abramova
We report on the design, synthesis and molecular modeling study of conjugates of adenosine diphosphate (ADP) and morpholino nucleosides as potential selective inhibitors of poly(ADP-ribose)polymerases-1, 2 and 3. Sixteen dinucleoside pyrophosphates containing natural heterocyclic bases as well as 5-haloganeted pyrimidines, and mimicking a main substrate of these enzymes, nicotinamide adenine dinucleotide (NAD+)-molecule, have been synthesized in a high yield. Morpholino nucleosides have been tethered to the β-phosphate of ADP via a phosphoester or phosphoramide bond. Screening of the inhibiting properties of these derivatives on the autopoly(ADP-ribosyl)ation of PARP-1 and PARP-2 has shown that the effect depends upon the type of nucleobase as well as on the linkage between ADP and morpholino nucleoside. The 5-iodination of uracil and the introduction of the P–N bond in NAD+-mimetics have shown to increase inhibition properties. Structural modeling suggested that the P–N bond can stabilize the pyrophosphate group in active conformation due to the formation of an intramolecular hydrogen bond. The most active NAD+ analog against PARP-1 contained 5-iodouracil 2ʹ-aminomethylmorpholino nucleoside with IC50 126 ± 6 μM, while in the case of PARP-2 it was adenine 2ʹ-aminomethylmorpholino nucleoside (IC50 63 ± 10 μM). In silico analysis revealed that thymine and uracil-based NAD+ analogs were recognized as the NAD+-analog that targets the nicotinamide binding site. On the contrary, the adenine 2ʹ-aminomethylmorpholino nucleoside-based NAD+ analogs were predicted to identify as PAR-analogs that target the acceptor binding site of PARP-2, representing a novel molecular mechanism for selective PARP inhibition. This discovery opens a new avenue for the rational design of PARP-1/2 specific inhibitors.