Katharina Webhofer

Ms. Katharina Webhofer

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Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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20 November 2021 in Biomolecules
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Journal Article
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FHFiona Hager-Mair
Fiona Hager-Mair
CSCordula Stefanović
Cordula Stefanović
CLCharlie Lim
Charlie Lim
KWKatharina Webhofer
Katharina Webhofer
SKSimon Krauter
Simon Krauter
SCSchäffer Christina
Schäffer Christina
Ketalpyruvyltransferases belong to a widespread but little investigated class of enzymes, which utilise phosphoenolpyruvate (PEP) for the pyruvylation of saccharides. Pyruvylated saccharides play pivotal biological roles, ranging from protein binding to virulence. Limiting factors for the characterisation of ketalpyruvyltransferases are the availability of cognate acceptor substrates and a straightforward enzyme assay. We report on a fast ketalpyruvyltransferase assay based on the colorimetric detection of phosphate released during pyruvyltransfer from PEP onto the acceptor via complexation with Malachite Green and molybdate. To optimise the assay for the model 4,6-ketalpyruvyl::ManNAc-transferase CsaB from Paenibacillus alvei, a β-d-ManNAc-α-d-GlcNAc-diphosphoryl-11-phenoxyundecyl acceptor mimicking an intermediate of the bacterium’s cell wall glycopolymer biosynthesis pathway, upon which CsaB is naturally active, was produced chemo-enzymatically and used together with recombinant CsaB. Optimal assay conditions were 5 min reaction time at 37 °C and pH 7.5, followed by colour development for 1 h at 37 °C and measurement of absorbance at 620 nm. The structure of the generated pyruvylated product was confirmed by NMR spectroscopy. Using the established assay, the first kinetic constants of a 4,6-ketalpyuvyl::ManNAc-transferase could be determined; upon variation of the acceptor and PEP concentrations, a KM, PEP of 19.50 ± 3.50 µM and kcat, PEP of 0.21 ± 0.01 s−1 as well as a KM, Acceptor of 258 ± 38 µM and a kcat, Acceptor of 0.15 ± 0.01 s−1 were revealed. P. alvei CsaB was inactive on synthetic pNP-β-d-ManNAc and β-d-ManNAc-β-d-GlcNAc-1-OMe, supporting the necessity of a complex acceptor substrate.

23 October 2025 in Biomolecules
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Journal Article
Open access
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KWKatharina Webhofer
Katharina Webhofer
DNDarsha Naidu
Darsha Naidu
MKMilandip Karak
Milandip Karak
SCStephen Cochrane
Stephen Cochrane
CMChris J MORRIS
Chris J MORRIS
Rachael DickmanRachael Dickman
Rachael Dickman
With antibiotic resistance becoming an increasingly pressing issue, the search for novel antimicrobial drugs is more important than ever before. The recently discovered calcium-dependent lipopeptides cadaside A/B and malacidin A/B have promising activity against resistant Gram-positive bacteria. With limited reports of synthetic routes towards these peptides available in the literature, especially for cadasides, we herein report a novel on-resin synthesis strategy. We used this strategy to produce fifteen simplified malacidin and cadaside analogues. In addition, both minimum inhibitory concentration and thin layer chromatography assays were conducted to determine antimicrobial activity and advance our understanding of these peptides’ structure–activity relationships.