The presence of mobile genetic elements in Salmonella isolated from a chicken farm constitutes a potential risk for the appearance of emerging bacteria present in the food industry. These elements contribute to increased pathogenicity and antimicrobial resistance through genes that are related to the formation of biofilms and resistance genes contained in plasmids, integrons, and transposons. One hundred and thirty-three Salmonella isolates from different stages of the production line, such as feed manufacturing, hatchery, broiler farm, poultry farm, and slaughterhouse, were identified, serotyped and sequenced. The most predominant serotype was Salmonella Infantis. Phylogenetic analyses demonstrated that the diversity and spread of strains in the pipeline are serotype-independent, and that isolates belonging to the same serotype are very closely related genetically. On the other hand, Salmonella Infantis isolates carried the pESI IncFIB plasmid harboring a wide variety of resistance genes, all linked to mobile genetic elements, and among carriers of these plasmids, the antibiograms showed differences in resistance profiles and this linked to a variety in plasmid structure, similarly observed in the diversity of Salmonella Heidelberg isolates carrying the IncI1-Iα plasmid. Mobile genetic elements encoding resistance and virulence genes also contributed to the differences in gene content. Antibiotic resistance genotypes were matched closely by the resistance phenotypes, with high frequency of tetracycline, aminoglycosides, and cephalosporins resistance. In conclusion, the contamination in the poultry industry is described throughout the entire production line, with mobile genetic elements leading to multi-drug resistant bacteria, thus promoting survival when challenged with various antimicrobial compounds.

Salmonella comprises over 2500 serotypes and foodborne contamination associated with this pathogen remains an important health concern worldwide. During the last decade, a shift in serotype prevalence has occurred as traditionally less prevalent serotypes are increasing in frequency of infections, especially those related to poultry meat contamination. S. Infantis is one of the major emerging serotypes, and these strains commonly display antimicrobial resistance and can persist despite cleaning protocols. Thus, this work aimed to isolate S. Infantis strains from a poultry meat farm in Santiago, Chile and to characterize genetic variations present in them. We determined their genomic and phenotypic profiles at different points along the production line. The results indicate that the strains encompass 853 polymorphic sites (core-SNPs) with isolates differing from one another by 0–347 core SNPs, suggesting variation among them; however, we found discrete correlations with the source of the sample in the production line. Furthermore, the pan-genome was composed of 4854 total gene clusters of which 2618 (53.9%) corresponds to the core-genome and only 181 (3.7%) are unique genes (those present in one particular strain). This preliminary analysis will enrich the surveillance of Salmonella, yet further studies are required to assess their evolution and phylogeny.

Salmonella is one of the main causes of food-borne illness worldwide. In most cases, Salmonella contamination can be traced back to food processing plants and/or to cross-contamination during food preparation. To avoid food-borne diseases, food processing plants use sanitizers and biocidal to reduce bacterial contaminants below acceptable levels. Despite these preventive actions, Salmonella can survive and consequently affect human health. This study investigates the adaptive capacity of the main Salmonella enterica serotypes isolated from the poultry production line, focusing on their replication, antimicrobial resistance, and biofilm formation under stressors such as acidic conditions, oxidative environment, and high osmolarity. Using growth curve analysis, crystal violet staining, and microscopy, we assessed replication, biofilm formation, and antimicrobial resistance under acidic, oxidative, and osmotic stress conditions. Disinfectant tolerance was evaluated by determining the Minimum Inhibitory Concentration (MIC) and Minimum Bactericidal Concentration (MBC) of sodium hypochlorite. The antibiotic resistance was assessed using the Kirby–Bauer method. The results indicate that, in general, acidic and osmotic stress reduce the growth of Salmonella. However, no significant differences were observed specifically for serotypes Infantis, Heidelberg, and Corvallis. The S. Infantis isolates were the strongest biofilm producers and showed the highest prevalence of multidrug resistance (71%). Interestingly, S. Infantis forming biofilms required up to 8-fold higher concentrations of sodium hypochlorite for eradication. Furthermore, osmotic and oxidative stress significantly induced biofilm production in industrial S. Infantis isolates compared to a reference strain. Understanding how Salmonella responds to industrial stressors is vital for designing strategies to control the proliferation of these highly adapted, multi-resistant pathogens.

Salmonella Typhimurium, a bacterial pathogen with high metabolic plasticity, can adapt to different environmental conditions; these traits enhance its virulence by enabling bacterial survival. Neutrophils play important roles in the innate immune response, including the production of microbicidal reactive oxygen species (ROS). In addition, the myeloperoxidase in neutrophils catalyzes the formation of hypochlorous acid (HOCl), a highly toxic molecule that reacts with essential biomolecules, causing oxidative damage including lipid peroxidation and protein carbonylation. The bacterial response regulator ArcA regulates adaptive responses to oxygen levels and influences the survival of Salmonella inside phagocytic cells. Here, we demonstrate by whole transcriptomic analyses that ArcA regulates genes related to various metabolic pathways, enabling bacterial survival during HOCl-stress in vitro. Also, inside neutrophils, ArcA controls the transcription of several metabolic pathways by downregulating the expression of genes related to fatty acid degradation, lysine degradation, and arginine, proline, pyruvate, and propanoate metabolism. ArcA also upregulates genes encoding components of the oxidative pathway. These results underscore the importance of ArcA in ATP generation inside the neutrophil phagosome and its participation in bacterial metabolic adaptations during HOCl stress.

Rare-earth elements (REEs) are crucial metals with limited global availability due to their indispensable role in various high-tech industries. As the demand for rare-earth elements continues to rise, there is a pressing need to develop sustainable methods for their recovery from secondary sources. Focusing on Exiguobacterium sp. SH31, this research investigates the impact of La, Eu, Gd, and Sm on its physiological performance and biosorption capacity. Tolerance was assessed at pHpzc from 7 to 8 with up to 1 mM rare-earth element concentrations. This study visualized the production of extracellular polymeric substances using Congo red assays and quantified them with ultraviolet–visible spectroscopy. Attenuated total reflectance Fourier transform infrared spectroscopy characterized the functional groups involved in metal interactions. The SH31 strain displayed significant rare-earth element tolerance, confirmed extracellular polymeric substance (EPS) production under all conditions, and increased production in the presence of Sm. Spectroscopy analysis revealed changes in wavelengths associated with OH and R-COO-, suggesting rare-earth element interactions. SH31 demonstrated efficient metal adsorption, with removal rates exceeding 75% at pHpzc 7 and over 95% at pHpzc 7.5 and 8. The calculated Qmax value for rare-earth element biosorption was approximately 23 mg/g, and Langmuir isotherm models effectively described metal sorption equilibria. Genomic exploration identified genes related to extracellular polymeric substance formation, providing insights into underlying mechanisms. This study presents the first evidence of efficient La, Eu, Gd, and Sm adsorption by SH31, emphasizing its potential significance in rare-earth element recovery.

Objective: During the COVID 19 pandemic, various measures, such as lockdowns and travel restrictions, were implemented to curb the spread of SARS CoV 2, significantly impacting case numbers. These interventions also influenced the incidence of other respiratory viruses, including respiratory syncytial virus (RSV) and influenza A (InfA). Materials and methods: This study examines the effect of SARS CoV 2 on the circulation of major respiratory viruses by analyzing epidemiological data from Chile between 2015 and 2023. Results: Data analysis revealed that during the pandemic, RSV, InfA, adenoviruses (ADV), and human metapneumovirus (HMPV) reached historically low levels. However, the relaxation of restrictions in 2021 led to a surge in respiratory virus infections, with RSV cases approaching pre-pandemic levels by 2022. Notably, in 2022 and 2023, infections caused by these viruses exceeded pre pandemic numbers. Conclusions: These findings align with epidemiological predictions regarding shifts in infection patterns due to preventive measures. Understanding these trends, particularly during lockdowns, is crucial for planning future outbreak response strategies. The insights gained from this analysis have recently informed proactive measures for Chile’s upcoming winter season, helping mitigate an anticipated rise in respiratory emergencies, especially among children in regions with high humidity and low temperatures.