Abubakar Siddique

Dr. Abubakar Siddique

NATIONAL UNIVERSITY OF SCIENCE AND TECHNOLOGY ISLAMABAD
orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 October 2020 in Toxins
Verified
Journal Article
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MMMudassar Mohiuddin
Mudassar Mohiuddin
Zahid IqbalZahid Iqbal
Zahid Iqbal
ASAbubakar Siddique
Abubakar Siddique
SLShenquan Liao
Shenquan Liao
MSMuhammad Khalid Farooq Salamat
Muhammad Khalid Farooq Salamat
MSMingfei Sun
Mingfei Sun
Clostridium perfringens poses a serious threat to small ruminants by causing moderate to severe enterotoxaemia. Due to its ability to produce a wide arsenal of toxins, it is ranked among the most prevalent and important pathogens in livestock. This study focused on the molecular characterization of different Clostridium perfringens types along with their antimicrobial resistance profile. An overall higher prevalence of C. perfringens (46.1%) was detected based on mPCR among sheep and goats (healthy and diseased) in the Punjab province, Pakistan. The majority of the isolates were characterized as type A (82%), followed by type D (18%). Among the isolates from diseased sheep and goats, 27% were positive for cpa, 49% for cpa and cpb2, 9% for cpa and etx, 15% for cpa, cpb2 and etx. In the case of isolates from healthy sheep and goats, 59% were positive for cpa, 34% for cpb2 and cpa, 4% for cpa and etx, and 3% for cpa, cpb2 and etx. The prevalence of the beta2 toxin gene in the diseased sheep and goat population was 64% as compared to 37% in healthy animals. All 184 isolates (100%) were sensitive to rifampin and ceftiofur; the majority (57%) was sensitive to teicoplanin, chloramphenicol, amoxicillin, linezolid and enrofloxacin. A lower proportion of isolates (43%) were sensitive to ciprofloxacin and only 14% were susceptible to erythromycin. The findings of this study highlight the higher prevalence of C. perfringens in small ruminants and indicate that detailed pathogenesis studies are necessary to understand the explicit role of various toxins in causing enteric infections in sheep and goats including how they might be exploited to develop vaccines against these diseases.

28 June 2021 in Antibiotics
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Journal Article
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ASAbubakar Siddique
Abubakar Siddique
SASara Azim
Sara Azim
Amjad AliAmjad Ali
Amjad Ali
INIqra Noor
Iqra Noor
AAAitezaz Ahsan
Aitezaz Ahsan
ARAbdur Rahman
Abdur Rahman
Salmonellosis caused by non-typhoidal Salmonella enterica from poultry products is a major public health concern worldwide. This study aimed at estimating the pathogenicity and antimicrobial resistance in S. enterica isolates obtained from poultry birds and their food products from different areas of Pakistan. In total, 95/370 (25.67%) samples from poultry droppings, organs, eggs, and meat were positive for Salmonella. The isolates were further identified through multiplex PCR (mPCR) as Salmonella Typhimurium 14 (14.7%), Salmonella Enteritidis 12 (12.6%), and other Salmonella spp. 69 (72.6%). The phenotypic virulence properties of 95 Salmonella isolates exhibited swimming and/or swarming motility 95 (100%), DNA degrading activity 93 (97.8%), hemolytic activity 92 (96.8%), lipase activity 87 (91.6%), and protease activity 86 (90.5%). The sopE virulence gene known for conferring zoonotic potential was detected in S. Typhimurium (92.8%), S. Enteritidis (100%), and other Salmonella spp. (69.5%). The isolates were further tested against 23 antibiotics (from 10 different antimicrobial groups) and were found resistant against fifteen to twenty-one antibiotics. All isolates showed multiple drug resistance and were found to exhibit a high multiple antibiotic-resistant (MAR) index of 0.62 to 0.91. The strong biofilm formation at 37 °C reflected their potential adherence to intestinal surfaces. There was a significant correlation between antimicrobial resistance and the biofilm formation potential of isolates. The resistance determinant genes found among the isolated strains were blaTEM-1 (59.3%), blaOxA-1 (18%), blaPSE-1 (9.5%), blaCMY-2 (43%), and ampC (8.3%). The detection of zoonotic potential MDR Salmonella in poultry and its associated food products carrying cephalosporin and quinolone resistance genes presents a major threat to the poultry industry and public health.

15 April 2022 in Nutrients
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HZHamza Zafar
Hamza Zafar
NANoor Ul Ain
Noor Ul Ain
AAAbdulrahman Alshammari
Abdulrahman Alshammari
SASaeed Alghamdi
Saeed Alghamdi
HRHafsa Raja
Hafsa Raja
ARAbdur Rahman
Abdur Rahman
Elevated serum cholesterol is a major risk factor for coronary heart diseases. Some Lactobacillus strains with cholesterol-lowering potential have been isolated from artisanal food products. The purpose of this study was to isolate probiotic Lactobacillus strains from traditional yoghurt (dahi) and yogurt milk (lassi) and investigate the impact of these strains on the blood lipid profile and anti-obesity effect in a high cholesterol high fat diet model in Wistar rats. Eight candidate probiotic strains were chosen based on in vitro probiotic features and cholesterol reduction ability. By 16S rDNA sequencing, these strains were identified as Limosilactibacillus fermentum FM6, L. fermentum FM16, L. fermentum FM12, Lacticaseibacillus rhamnosus FM9, L. fermentum Y55, L. fermentum Y57, L. rhamnosus Y59, and L. fermentum Y63. The safety of these strains was investigated by feeding 2 × 108 CFU/mL in saline water for 28 days in a Wistar rat model. No bacterial translocation or any other adverse effects were observed in animals after administration of strains in water, which indicates the safety of strains. The cholesterol-lowering profile of these probiotics was evaluated in male Wistar rats using a high-fat, high-cholesterol diet (HFCD) model. For 30 days, animals were fed probiotic strains in water with 2 × 108 CFU/mL/rat/day, in addition to a high fat, high cholesterol diet. The cholesterol-lowering effects of various probiotic strains were compared to those of statin. All strains showed improvement in total cholesterol, LDL, HDL, triglycerides, and weight gain. Serum cholesterol levels were reduced by 9% and 8% for L. rhamnosus FM9 and L. fermentum Y57, respectively, compared to 5% for the statin-treated group. HDL levels significantly improved by 46 and 44% for L. rhamnosus FM9 and L. fermentum Y57, respectively, compared to 46% for the statin-treated group. Compared to the statin-treated group, FM9 and Y57 significantly reduced LDL levels by almost twofold. These findings show that these strains can improve blood lipid profiles as effectively as statins in male Wistar rats. Furthermore, probiotic-fed groups helped weight control in animals on HFCD, indicating the possible anti-obesity potential of these strains. These strains can be used to develop food products and supplements to treat ischemic heart diseases and weight management. Clinical trials, however, are required to validate these findings.

1 December 2021 in Animals
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Journal Article
Open access
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ASAbubakar Siddique
Abubakar Siddique
SASara Azim
Sara Azim
Amjad AliAmjad Ali
Amjad Ali
Fazal AdnanFazal Adnan
Fazal Adnan
MAMaryum Arif
Maryum Arif
ARAbdur Rahman
Abdur Rahman
Non-typhoidal Salmonella (NTS) can cause infection in poultry, livestock, and humans. Although the use of antimicrobials as feed additives is prohibited, the previous indiscriminate use and poor regulatory oversight in some parts of the world have resulted in increased bacterial resistance to antimicrobials, including cephalosporins and fluoroquinolones, which are among the limited treatment options available against NTS. This study aimed to isolate potential probiotic lactic acid bacteria (LAB) strains from the poultry gut to inhibit fluoroquinolone and cephalosporin resistant MDR Salmonella Typhimurium and S. Enteritidis. The safety profile of the LAB isolates was evaluated for the hemolytic activity, DNase activity, and antibiotic resistance. Based on the safety results, three possible probiotic LAB candidates for in vitro Salmonella control were chosen. Candidate LAB isolates were identified by 16S rDNA sequencing as Lactobacillus reuteri PFS4, Enterococcus faecium PFS13, and Enterococcus faecium PFS14. These strains demonstrated a good tolerance to gastrointestinal-related stresses, including gastric acid, bile, lysozyme, and phenol. In addition, the isolates that were able to auto aggregate had the ability to co-aggregate with MDR S. Typhimurium and S. Enteritidis. Furthermore, LAB strains competitively reduced the adhesion of pathogens to porcine mucin Type III in co-culture studies. The probiotic combination of the selected LAB isolates inhibited the biofilm formation of S. Typhimurium FML15 and S. Enteritidis FML18 by 90% and 92%, respectively. In addition, the cell-free supernatant (CFS) of the LAB culture significantly reduced the growth of Salmonella in vitro. Thus, L. reuteri PFS4, E. faecium PFS13, and E. faecium PFS 14 are potential probiotics that could be used to control MDR S. Typhimurium and S. Enteritidis in poultry. Future investigations are required to elucidate the in vivo potential of these probiotic candidates as Salmonella control agents in poultry and animal feed.

20 April 2013 in Greener Journal of Medical Sciences
Verified
Journal Article
Open access
ZRZarifa Murshed Raceme
Zarifa Murshed Raceme
SBSheikh Enayetul Babar
Sheikh Enayetul Babar
ASAbubakar Siddique
Abubakar Siddique

22 September 2020 in Journal of Young Pharmacists
Verified
Journal Article
Open access
ASAbubakar Siddique
Abubakar Siddique
HAHafeez Hafeez Ak
Hafeez Hafeez Ak
SHShekhar Shekhar Hs
Shekhar Shekhar Hs
AAAshfaque Ashfaque A
Ashfaque Ashfaque A
Background: Antibiotics are among the most frequently used drugs worldwide. An average 35% of the total health budget is spent on antibiotics. Overuse and/or misuse of antibiotics has significant consequences, such as increased cost, bacterial resistance, therapeutic failure, drug toxicity and drug interactions. The objective of this study was to evaluate the prescribing pattern of antibiotics in Medicine ward of a tertiary care hospital in Bangalore. Methods: Hospital based retrospective study carried out in medicine ward of a tertiary care hospital in Bangalore. A retrospective study was carried out by collecting the data of the medication orders given for a period of 12 months. A total of 741 medication order was studied of which 470 were for males and 271 for females, between the age group of 15-92 years. Results: The results showed that the most commonly prescribed class of antibiotics were: Cephalosporins 571 (47.22%), Quinolone 237 (19.6%), Cephalosporins + Penicillinase inhibitors 159 (13.15%), Penicillin + Penicillinase inhibitor 73 (6.03), Aminoglycoside 27 (2.23%), Macrolides 13 (1.07%), Sulphonamides 1 (0.08%), Tetracyclines 2 (0.16%) and others 126 (10.4%). Conclusion: The most commonly prescribed class of antibiotics was Cephalosporins. Detailed knowledge of antibiotic prescription pattern is important to monitor the rational use of antibiotics and is important before the therapeutic policies and measures can be implemented. It’s recommended to involve an active clinical pharmacist in the hospital to study the drug use pattern and intervention as and when necessary. Key words: Prescribing, Antibiotics, Rational Use, Tertiary Care Hospital, Therapeutic Policies.