Plant and microbiome interactions are necessary for plant nutrient acquisition. However, relatively little is known about the responses of roots, bulk, and rhizosphere soil microbial communities in different artificial vegetation types (woody and herbaceous) in riparian areas of massive dams and reservoirs. Therefore, this study aims to assess such responses at elevations of 165–170 m a.s.l. in the riparian zones of the Three Gorges Dam Reservoir, China. The samples were collected containing the rhizosphere soil, bulk soil, and roots of herbaceous and woody vegetation at different emergence stages in 2018. Then, all the samples were analyzed to quantify the soil properties, bacterial community characteristics, and their interaction in the early and late emergence phases. In different periods, the weight of dominant soil bacteria, including Proteobacteria, Acidobacteria, Actinobacteria, Chloroflexi, and Cyanobacteria, was higher, and their composition was different in the rhizosphere, bulk soil, and endophytes. Moreover, the soil co-occurrence networks indicated that the weight of soil physical properties was higher than chemical properties in the early emergence stage. In contrast, the weight of chemical properties was relatively higher in the late emergence stage. Furthermore, the richness and diversity of the bacterial community were mainly affected by soil organic matter. This study suggests that these herbaceous and woody vegetation are suitable for planting in reservoir areas affected by hydrology and human disturbance in light of soil nutrients and soil microbial communities, respectively. Additionally, these results provide valuable information to inoculate the soil with key microbiota members by applying fertilizers, potentially improving plant health and soil production.

Litter decomposition is an important soil nutrient source that promotes vegetation in deteriorated riparian zones worldwide. The periodic submergence and sediment burial effects on two prominent annual herbaceous plants (Echinochloa crusgali and Bidens tripartite) are little known in mega-reservoir settings. Our study focuses on the mass and carbon loss and nutrient release from E. crusgali and B. tripartitle litter and changes in soil properties, which are important for riparian zone rehabilitation in the Three Gorges Dam Reservoir, China. This study adopted the litter bag method to explore the nutrient change characteristics and changes in soil properties at different sediment burial depths under flooding scenarios. Three burial depths (0 cm, 5 cm, and 10 cm) were used for these two plants, and the experiment lasted for 180 days. The results revealed that the litter decay rate was high at first in the incubation experiment, and the nutrient loss rate followed the pattern of K > P > N > C. The relationship between % C remaining and % mass remaining was nearly 1:1, and the total amount of P exhibited a leaching–enrichment–release state in the decomposition process. Nutrients were changed significantly in the soil and overlying water at the first decomposition stage. Still, the total soil nutrient change was insignificant at the end, except for the 10 cm burial of B. tripartitle. Moreover, oxidation–reduction potential was the main factor in the litter decomposition process at different burial depths. This study indicated that sediment deposition reduced litter mass loss, slowed down the release of N and P, and retained more C, but promoted the release of K. Conclusively, in litter decomposition under waterlogging, the total soil nutrient content changed little. However, litter does more to the soil than that. Therefore, it is necessary to study the residual soil litter’s continuous output after the water level declines for restoration purposes.

Ecological stoichiometric studies can be useful for managing the deteriorated riparian zones of mega-reservoirs in which nutrients significantly impact the balanced vegetation cover. The present study aims to explore the effects of periodic submergence on the stoichiometric ecological characteristics of carbon (C), nitrogen (N), and phosphorus (P), as well as the growth conditions of two leading conifer species (Taxodium distichum and Taxodium ascendens) in the hydro-fluctuation zone of the Three Gorges Reservoir (TGR) region, China. The stoichiometrical contents of C, N, and P in fine roots, leaves, and branches, and the growth conditions of T. distichum and T. ascendens were measured in July 2019. The results showed that periodic submergence affected the stoichiometric characteristics and growth conditions of these two woody species, and the impact was restrained, but both grew well. The effects of inundation on the C, N, and P ecological stoichiometric characteristics differed in different parts of trees. In general, the C contents showed the following pattern: leaves > branches > fine roots. The N and P content showed the following pattern: leaves > fine roots > branches, while the C/N and C/P ratios showed an opposite trend to that of N and P. The N and P content in all parts of T. distichum (with means of 17.18 and 1.70 g/kg for leaves, 4.80 and 0.57 g/kg for branches, and 6.88 and 1.10 g/kg for fine roots, respectively) and T. ascendens (with means of 14.56 and 1.87 g/kg for leaves, 5.03 and 0.63 g/kg for branches, and 8.17 and 1.66 g/kg for fine roots, respectively) were higher than the national average level (with means of 14.14 and 1.11 g/kg for leaves, 3.04 and 0.31 g/kg for branches, and 4.85 and 0.47 g/kg for fine roots, respectively). Except for N and P contents in the leaves of T. distichum, there was a significant correlation between N and P elements in other parts (p < 0.05). Nevertheless, the N/P ratio (10.15, 8.52, 6.44, and 7.93, 8.12, 5.20 in leaves, branches, and fine roots of T. distichum and T. ascendens, respectively) was lower than the critical ratio of 14. The growth conditions of T. distichum and T. ascendens were significantly negatively correlated with their leaf C contents and significantly positively correlated with their fine root N and P contents. This study showed that T. distichum and T. ascendens could maintain their normal growth needs by properly allocating nutrients between different organs to adapt to the long periodic submergence in the hydro-fluctuation zone of the TGR region.

Due to the destruction of natural aquatic ecosystems, developing comprehensive biological index evaluation methods is critical for river restoration and regeneration. However, research on spatial multiple-scale biological assessments remains lacking. This study used the biological integrity index methodology to examine the effectiveness of fish and macrobenthos in ecological assessments, as well as to analyze environmental factors impacting aquatic ecosystem health assessments. The Daning River basin in Chongqing was selected as the study area, and aquatic ecosystem health assessments were conducted at both regional and local scales. The results indicated that benthos were more abundant than fish, but there were no significant differences in species richness between sub-basins (p > 0.05). The assessment results for F-IBI and B-IBI showed partial discrepancies at the local fine-scale level but were nearly consistent at the regional broad-scale sub-basin level, with only small differences between the F-IBI and B-IBI ratings in one sub-basin. This discrepancy may be due to the diverse water environment. Woodland areas have significant negative relationships with F-IBI, while water areas have significant positive relationships with it. Comprehensively, the assessment findings of F-IBI beat those of B-IBI, implying that F-IBI may be better suited for regional assessments. However, the impact of local water quality issues remains unclear. To enhance ecological restoration, it is vital to conduct additional research into the degree of interference caused by water quality variables.