Kyle Shimabuku

Dr. Kyle Shimabuku


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
6 October 2016 in Environmental Science & Technology
Verified
Journal Article
Closed access
KTKyle A. Thompson
Kyle A. Thompson
KSKyle Shimabuku
Kyle Shimabuku
JKJoshua P. Kearns
Joshua P. Kearns
DKDetlef R. U. Knappe
Detlef R. U. Knappe
RSR. Scott Summers
R. Scott Summers
SCSherri Cook
Sherri Cook

3 February 2019 in Environmental Science & Technology
Verified
Journal Article
Open access
HHHuan He
Huan He
PZPeiran Zhou
Peiran Zhou
KSKyle Shimabuku
Kyle Shimabuku
XFXuzhi Fang
Xuzhi Fang
SLShu Li
Shu Li
MDMichael C. Dodd
Michael C. Dodd
This work investigated degradation (measured by qPCR) and biological deactivation (measured by culture-based natural transformation) of extra- and intracellular antibiotic resistance genes (eARGs and iARGs) by free available chlorine (FAC), NH2Cl, O3, ClO2, and UV light (254 nm), and of eARGs by •OH, using a chromosomal ARG (blt) of multidrug-resistant Bacillus subtilis 1A189. Rate constants for degradation of four 266–1017 bp amplicons adjacent to or encompassing the acfA mutation enabling blt overexpression increased in proportion to #AT+GC bps/amplicon, or in proportion to #5′-GG-3′ or 5′-TT-3′ doublets/amplicon, with respective values ranging from 0.59 to 2.3 (×1011 M–1 s–1) for •OH, 1.8–6.9 (×104 M–1 s–1) for O3, 3.9–9.2 (×103 M–1 s–1) for FAC, 0.35–1.2(×101 M–1 s–1) for ClO2, and 2.0–8.8 (×10–2 cm2/mJ) for UV at pH 7, and from 1.7–4.4 M–1 s–1 for NH2Cl at pH 8. For FAC, NH2Cl, O3, ClO2, and UV, ARG deactivation paralleled degradation of amplicons approximating a ∼800–1000 bp acfA-flanking sequence required for natural transformation in B. subtilis, whereas deactivation outpaced degradation for •OH. At practical disinfectant exposures, eARGs and iARGs were ≥90% degraded/deactivated by FAC, O3, and UV, but recalcitrant to NH2Cl and ClO2. iARG degradation/deactivation always lagged cell inactivation. These findings provide a quantitative framework for evaluating ARG fate during disinfection/oxidation, and support using qPCR as a proxy for tracking ARG deactivation under carefully selected circumstances.

1 June 2016 in Water Research
Verified
Journal Article
Closed access
KSKyle Shimabuku
Kyle Shimabuku
JKJoshua P. Kearns
Joshua P. Kearns
JMJuan E. Martinez
Juan E. Martinez
RMRyan B. Mahoney
Ryan B. Mahoney
LMLaura Moreno-Vasquez
Laura Moreno-Vasquez
RSR. Scott Summers
R. Scott Summers

16 June 2014 in Environmental Science & Technology
Verified
Journal Article
Open access
JMJosé Diego Méndez-Díaz
José Diego Méndez-Díaz
KSKyle Shimabuku
Kyle Shimabuku
JMJing Ma
Jing Ma
ZEZachary O. Enumah
Zachary O. Enumah
JPJoseph J. Pignatello
Joseph J. Pignatello
MDMichael C. Dodd
Michael C. Dodd
Reactions of dissolved organic matter (DOM) with photochemically generated reactive halogen species (RHS) may represent an important natural source of organohalogens within surface seawaters. However, investigation of such processes has been limited by difficulties in quantifying low dissolved organohalogen concentrations in the presence of background inorganic halides. In this work, sequential solid phase extraction (SPE) and silver-form cation exchange filtration were utilized to desalt and preconcentrate seawater DOM prior to nonspecific organohalogen analysis by ICP-MS. Using this approach, native organobromine and organoiodine contents were found to range from 3.2−6.4 × 10–4 mol Br/mol C and 1.1–3.8 × 10–4 mol I/mol C (or 19–160 nmol Br L–1 and 6–36 nmol I L–1) within a wide variety of natural seawater samples, compared with 0.6–1.2 × 10–4 mol Br/mol C and 0.6–1.1 × 10–5 mol I/mol C in terrestrial natural organic matter (NOM) isolates. Together with a chemical probe method specific for RHS, the SPE+ICP-MS approach was also employed to demonstrate formation of nanomolar levels of organobromine and organoiodine during simulated and natural solar irradiation of DOM in artificial and natural seawaters. In a typical experiment, the organobromine content of 2.1 × 10–4 mol C L–1 (2.5 mg C L–1) of Suwannee River NOM in artificial seawater increased by 69% (from 5.9 × 10–5 to 1.0 × 10–4 mol Br/mol C) during exposure to 24 h of simulated sunlight. Increasing I– concentrations (up to 2.0 × 10–7 mol L–1) promoted increases of up to 460% in organoiodine content (from 8.5 × 10–6 to 4.8 × 10–5 mol I/mol C) at the expense of organobromine formation under the same conditions. The results reported herein suggest that sunlight-driven reactions of RHS with DOM may play a significant role in marine bromine and iodine cycling.

14 February 2017 in Environmental Science & Technology
Verified
Journal Article
Closed access
KSKyle Shimabuku
Kyle Shimabuku
AKAnthony M. Kennedy
Anthony M. Kennedy
RMRiley Mulhern
Riley Mulhern
RSR. Scott Summers
R. Scott Summers

1 June 2013 in Water Research
Verified
Journal Article
Closed access
RSR. Scott Summers
R. Scott Summers
SKSoo Myung Kim
Soo Myung Kim
KSKyle Shimabuku
Kyle Shimabuku
SCSeon-Ha Chae
Seon-Ha Chae
CCChristopher J. Corwin
Christopher J. Corwin