Jean-Charles Pavard

Mr. Jean-Charles Pavard

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 May 2023 in Estuarine, Coastal and Shelf Science
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Journal Article
Closed access
JPJean-Charles Pavard
Jean-Charles Pavard
JRJulien Richirt
Julien Richirt
Laurent SeurontLaurent Seuront
Laurent Seuront
HBHugues Blanchet
Hugues Blanchet
MFMarie P.A. Fouet
Marie P.A. Fouet
Vincent BouchetVincent Bouchet
Vincent Bouchet

18 April 2023 in Aquatic Invasions
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Journal Article
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Vincent BouchetVincent Bouchet
Vincent Bouchet
JPJean-Charles Pavard
Jean-Charles Pavard
MHMaria Holzmann
Maria Holzmann
MMMary McGann
Mary McGann
ECEric Armynot du Châtelet
Eric Armynot du Châtelet
Laurent SeurontLaurent Seuront
Laurent Seuront
The invasive benthic foraminifera Trochammina hadai has been found for the first time in Europe along the coast of Normandy. Its native range of distribution is in Asia (Japan and Korea), and it has also been introduced along the coasts of western North America, Brazil and Australia. Morphological and molecular assessments confirm that specimens found in Le Havre and Caen-Ouistreham harbors belong to the Asiatic type. Like in Asia, T. hadai was found in transitional waters with muddy sediments. It exhibited high relative abundances (up to about 40%) confirming that T. hadai is a highly competitive species. In the present study, it was nearly absent from natural transitional waters and very abundant in heavily modified habitats like harbors, suggesting that ballast waters may likely be the vector of introduction. It was not recorded farther north along the coast of the Hauts-de-France. It is further hypothesized that the finding of a few specimens outside the harbor may facilitate the expansion of T. hadai in the English Channel by means of propagules dispersion.

13 September 2023 in Aquatic Invasions
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Journal Article
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JPJean-Charles Pavard
Jean-Charles Pavard
Vincent BouchetVincent Bouchet
Vincent Bouchet
JRJulien Richirt
Julien Richirt
ACApolyne Courleux
Apolyne Courleux
ECEric Armynot du Châtelet
Eric Armynot du Châtelet
Laurent SeurontLaurent Seuront
Laurent Seuront
Though the morphological discrimination of the three pseudo-cryptic Ammonia species, A. aberdoveyensis, A. confertitesta and A. veneta, has been recently established, information on their ecology and habitats are still relatively scarce. This study aims to define distribution patterns of these species at eight sites scattered along the French coasts of the English Channel, over a total of 39 stations. These sites were classified into two habitats, either harbours (heavily modified sites) or less impacted (moderately influenced sites). The use of IndVal index (an index based on how a species is statistically specific to a habitat) clearly indicates that A. confertitesta is recorded preferentially in or close to harbours. Considering its non-indigenous species (NIS) status in Europe, we investigated its reported occurrences in Europe in the literature. It almost always showed a proximity to major European harbours. Sometimes, this species occurred relatively far away from these harbours, suggesting a secondary spread. Finally, this work interprets A. confertitesta being a NIS in the eastern English Channel with assumptions of being invasive regarding its dominance over the indigenous species A. aberdoveyensis and A. veneta. Complementary works such as retrospective core studies of fossil faunas are needed to quantitatively assess when and where A. confertitesta was introduced in Europe and potentially started to replace its congenerics A. veneta and A. aberdoveyensis.

13 December 2021 in Water
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Journal Article
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JPJean-Charles Pavard
Jean-Charles Pavard
JRJulien Richirt
Julien Richirt
LCLucie Courcot
Lucie Courcot
PBPascal Bouchet
Pascal Bouchet
Laurent SeurontLaurent Seuront
Laurent Seuront
Vincent BouchetVincent Bouchet
Vincent Bouchet
Among benthic foraminifera, the genus Ammonia is characterized by high morphological variability which makes it particularly challenging to recognize using traditional morphology-based taxonomy. Despite the joint efforts made by both molecular and morphological taxonomists, it is still hard to identify different phylotypes based on their morphology. A new method was developed recently to discriminate three NE Atlantic phylotypes of Ammonia (T1, T2, and T6). This method is based on two morphometrical parameters using scanning electron microscope (SEM) images (i.e., the average pore diameter and the elevation of sutures on the spiral side), resulting individuals being correctly assigned to their phylotype in more than 90% of cases. In this study, we assess the possibility of implementing these criteria using a stereomicroscope. Phylotype assignations by SEM and stereomicroscopic identifications are in accordance for 62.6% of the scrutinized foraminifera and increase up to 79.5% when only the phylotype T6 is considered. Though the stereomicroscopic identification of Ammonia phylotypes based on these two morphological parameters needs to be cross-validated using molecular tools, this approach noticeably allows the identification of an individual 3 to 7 times faster than using a SEM. The ratio between accuracy and efficiency, an issue that is also attributable to the use of the rose Bengal staining method, suggests prioritizing the use of stereomicroscope identifications in large foraminiferal surveys. Finally, in the context that Ammonia phylotype T6 potentially being an alien species in Europe, this method will help to quickly identify Ammonia phylotypes; hence contributing to monitor the presence of T6 in different regions and then, offering interesting research perspectives to assess the timing and/or the progression of the possible invasion.

11 October 2021 in Water
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ADAntoine Dubois
Antoine Dubois
CBChristine Barras
Christine Barras
JPJean-Charles Pavard
Jean-Charles Pavard
ADAnnick Donnay
Annick Donnay
MBMelvin Béatrix
Melvin Béatrix
Vincent BouchetVincent Bouchet
Vincent Bouchet
Corsican marine aquaculture is one of the highest contributors of fish production in France, which may result in environmental perturbations caused by organic matter (OM) accumulation under fish farms and impacting natural communities. This study aimed to (1) characterise the environmental conditions at two different fish farms, (2) monitor the response of benthic foraminiferal species to this activity, and (3) assess the accuracy of existing foraminiferal biotic indices. In 2017, sea floor sediment was sampled in transects from two Corsican fish farms for living foraminiferal and sedimentary analyses. Four indices were calculated and compared: exp(H′bc), Foram-AMBI, Foram Stress Index and TSI-Med. A significant increase in total organic carbon (TOC) has been shown, mainly below the fish cages. Communities were characterized by a shift from high density, opportunistic and tolerant species under the cages to lower densities and more sensitive species further away. According to their distribution patterns along the TOC gradient, we propose to update the ecological group classification of seven species to improve Foram-AMBI’s accuracy and sensitivity: Triloculina oblonga and Quinqueloculina lamarckiana to Ecological Group (EG) I; Rosalina bradyi to EGIII; and Bolivina dilatata, Bulimina aculeata and Quinqueloculina stalkeri to EGIV. We recommend prioritising the use of TSI-Med and Foram-AMBI with the updated list to assess ecological quality in coastal waters of the Mediterranean Sea.

8 September 2025 in Journal of Micropalaeontology
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MMMary McGann
Mary McGann
MHMaria Holzmann
Maria Holzmann
Vincent BouchetVincent Bouchet
Vincent Bouchet
SDSibelle Trevisan Disaró
Sibelle Trevisan Disaró
PEPatricia Eichler
Patricia Eichler
TLThomas D. Lorenson
Thomas D. Lorenson
A non-indigenous species (NIS) of benthic foraminifera was first identified in a core collected in 1993 in San Francisco Bay, California, USA, and subsequently identified as Trochammina hadai Uchio, 1962. Archived samples and literature reviews were used to determine that the species, which is native to Asia, arrived in San Francisco Bay between the early 1960s and 1983. Through molecular analyses of specimens, archived samples and literature reviews from 1930–1983, and site surveys of harbors and estuaries along the western North American seaboard in 1994–2024, in total more than 2500 samples, we documented the presence of T. hadai at 73 locations in the USA and four in Canada. Trochammina hadai has also been recovered at nine sites in Sweden, two in France, three in Brazil, and two locations at one site in Australia. The rapid temporal and geographic spread of the NIS T. hadai in a non-native location is illustrated by a time series from 1930 to 2024 in San Francisco Bay. Between 1980 and 1986, the species' range expanded from low abundance (1.5 %) at a single site to cover nearly the entire South Bay with > 70 % abundance at some locations. By 1995 and continuing into 2010, the species expanded its range into the central and northern portions of San Francisco Bay, commonly with abundances of > 30 % and sometimes exceeding 70 %. This expansion may predate 1995, but a lack of samples makes it difficult to be more precise. Unfortunately, two Pb-210 and Cs-137-dated cores (BC01 and BC02) recovered from northern South Bay and Central Bay did not clarify this point, but additional cores may. Trochammina hadai is an infaunal opportunist that thrives in polluted locations. We surmise the species was introduced along the west coast of the USA in Puget Sound between 1902 and the 1920s, with cultivated oysters and oyster larvae and associated plant matter and residual sediment. This probably also happened in some areas of France, Sweden, and Brazil, where Japanese oysters were introduced in 1966, 1970, and 1975, respectively. After World War II, commercial shipping expanded dramatically and, with it, the release of ballast water and sediment in receiving ports, which introduced NIS worldwide. This primary vector of introduction occurred in large industrial harbors in several countries, sometimes followed by secondary introductions in small industrial centers and marinas by mud attached to the anchors and anchor chains of smaller boats.