Mariam S. Aboian

Dr. Mariam S. Aboian

Yale University, New Haven, Connecticut, USA
orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 February 2017 in American Journal of Neuroradiology
Verified
Journal Article
Open access
PDF file
MAMariam S. Aboian
Mariam S. Aboian
DSD.A. Solomon
D.A. Solomon
EFE. Felton
E. Felton
MMM.C. Mabray
M.C. Mabray
JVJ.E. Villanueva-Meyer
J.E. Villanueva-Meyer
SCS. Cha
S. Cha
BACKGROUND AND PURPOSE: The 2016 World Health Organization Classification of Tumors of the Central Nervous System includes “diffuse midline glioma with histone H3 K27M mutation” as a new diagnostic entity. We describe the MR imaging characteristics of this new tumor entity in pediatric patients. MATERIALS AND METHODS: We retrospectively reviewed imaging features of pediatric patients with midline gliomas with or without the histone H3 K27 mutation. We evaluated the imaging features of these tumors on the basis of location, enhancement pattern, and necrosis. RESULTS: Among 33 patients with diffuse midline gliomas, histone H3 K27M mutation was present in 24 patients (72.7%) and absent in 9 (27.3%). Of the tumors, 27.3% (n = 9) were located in the thalamus; 42.4% (n = 14), in the pons; 15% (n = 5), within the vermis/fourth ventricle; and 6% (n = 2), in the spinal cord. The radiographic features of diffuse midline gliomas with histone H3 K27M mutation were highly variable, ranging from expansile masses without enhancement or necrosis with large areas of surrounding infiltrative growth to peripherally enhancing masses with central necrosis with significant mass effect but little surrounding T2/FLAIR hyperintensity. When we compared diffuse midline gliomas on the basis of the presence or absence of histone H3 K27M mutation, there was no significant correlation between enhancement or border characteristics, infiltrative appearance, or presence of edema. CONCLUSIONS: We describe, for the first time, the MR imaging features of pediatric diffuse midline gliomas with histone H3 K27M mutation. Similar to the heterogeneous histologic features among these tumors, they also have a diverse imaging appearance without distinguishing features from histone H3 wildtype diffuse gliomas.

1 February 2023 in Bioengineering
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Journal Article
Open access
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AAArman Avesta
Arman Avesta
SHSajid Hossain
Sajid Hossain
MLMingDe Lin
MingDe Lin
MAMariam S. Aboian
Mariam S. Aboian
HKHarlan M. Krumholz
Harlan M. Krumholz
SASanjay Aneja
Sanjay Aneja
Deep-learning methods for auto-segmenting brain images either segment one slice of the image (2D), five consecutive slices of the image (2.5D), or an entire volume of the image (3D). Whether one approach is superior for auto-segmenting brain images is not known. We compared these three approaches (3D, 2.5D, and 2D) across three auto-segmentation models (capsule networks, UNets, and nnUNets) to segment brain structures. We used 3430 brain MRIs, acquired in a multi-institutional study, to train and test our models. We used the following performance metrics: segmentation accuracy, performance with limited training data, required computational memory, and computational speed during training and deployment. The 3D, 2.5D, and 2D approaches respectively gave the highest to lowest Dice scores across all models. 3D models maintained higher Dice scores when the training set size was decreased from 3199 MRIs down to 60 MRIs. 3D models converged 20% to 40% faster during training and were 30% to 50% faster during deployment. However, 3D models require 20 times more computational memory compared to 2.5D or 2D models. This study showed that 3D models are more accurate, maintain better performance with limited training data, and are faster to train and deploy. However, 3D models require more computational memory compared to 2.5D or 2D models.

1 July 2024 in Radiology: Artificial Intelligence
Verified
Journal Article
Closed access
MLMarius George Linguraru
Marius George Linguraru
Spyridon BakasSpyridon Bakas
Spyridon Bakas
MAMariam S. Aboian
Mariam S. Aboian
PCPeter D. Chang
Peter D. Chang
AFAdam E. Flanders
Adam E. Flanders
CKCharles E. Kahn
Charles E. Kahn
"Just Accepted" papers have undergone full peer review and have been accepted for publication in Radiology: Artificial Intelligence. This article will undergo copyediting, layout, and proof review before it is published in its final version. Please note that during production of the final copyedited article, errors may be discovered which could affect the content. The Radiological Society of North of America (RSNA) and the Medical Image Computing and Computer Assisted Intervention (MICCAI) Society have led a series of joint panels and seminars focused on the present impact and future directions of artificial intelligence (AI) in radiology. These conversations have collected viewpoints from multidisciplinary experts in radiology, medical imaging, and machine learning on the current clinical penetration of AI technology in radiology, and how it is impacted by trust, reproducibility, explainability, and accountability. The collective points-both practical and philosophical-define the cultural changes for radiologists and AI scientists working together and describe the challenges ahead for AI technologies to meet broad approval. This article presents the perspectives of experts from MICCAI and RSNA on the clinical, cultural, computational, and regulatory considerations-coupled with recommended reading materials-essential to adopt AI technology successfully in radiology and more generally in clinical practice. The report emphasizes the importance of collaboration to improve clinical deployment and highlights the need to integrate clinical and medical imaging data and introduces strategies to ensure smooth and incentivized integration. ©RSNA, 2024.

13 October 2022 in Frontiers in Neuroscience
Verified
Journal Article
Open access
MAMariam S. Aboian
Mariam S. Aboian
KBKhaled Bousabarah
Khaled Bousabarah
EKEve Kazarian
Eve Kazarian
TZTal Zeevi
Tal Zeevi
WHWolfgang Holler
Wolfgang Holler
MWMalte Westerhoff
Malte Westerhoff
Purpose: Personalized interpretation of medical images is critical for optimum patient care, but current tools available to physicians to perform quantitative analysis of patient’s medical images in real time are significantly limited. In this work, we describe a novel platform within PACS for volumetric analysis of images and thus development of large expert annotated datasets in parallel with radiologist performing the reading that are critically needed for development of clinically meaningful AI algorithms. Specifically, we implemented a deep learning-based algorithm for automated brain tumor segmentation and radiomics extraction, and embedded it into PACS to accelerate a supervised, end-to- end workflow for image annotation and radiomic feature extraction.Materials and methods: An algorithm was trained to segment whole primary brain tumors on FLAIR images from multi-institutional glioma BraTS 2021 dataset. Algorithm was validated using internal dataset from Yale New Haven Health (YHHH) and compared (by Dice similarity coefficient [DSC]) to radiologist manual segmentation. A UNETR deep-learning was embedded into Visage 7 (Visage Imaging, Inc., San Diego, CA, United States) diagnostic workstation. The automatically segmented brain tumor was pliable for manual modification. PyRadiomics (Harvard Medical School, Boston, MA) was natively embedded into Visage 7 for feature extraction from the brain tumor segmentations.Results: UNETR brain tumor segmentation took on average 4 s and the median DSC was 86%, which is similar to published literature but lower than the RSNA ASNR MICCAI BRATS challenge 2021. Finally, extraction of 106 radiomic features within PACS took on average 5.8 ± 0.01 s. The extracted radiomic features did not vary over time of extraction or whether they were extracted within PACS or outside of PACS. The ability to perform segmentation and feature extraction before radiologist opens the study was made available in the workflow. Opening the study in PACS, allows the radiologists to verify the segmentation and thus annotate the study.Conclusion: Integration of image processing algorithms for tumor auto-segmentation and feature extraction into PACS allows curation of large datasets of annotated medical images and can accelerate translation of research into development of personalized medicine applications in the clinic. The ability to use familiar clinical tools to revise the AI segmentations and natively embedding the segmentation and radiomic feature extraction tools on the diagnostic workstation accelerates the process to generate ground-truth data.

8 March 2022 in Cancers
Verified
Journal Article
Open access
PDF file
Leon JekelLeon Jekel
Leon Jekel
WBWaverly R. Brim
Waverly R. Brim
MRMarc von Reppert
Marc von Reppert
LSLawrence Staib
Lawrence Staib
GPGabriel Cassinelli Petersen
Gabriel Cassinelli Petersen
MAMariam S. Aboian
Mariam S. Aboian
Glioma and brain metastasis can be difficult to distinguish on conventional magnetic resonance imaging (MRI) due to the similarity of imaging features in specific clinical circumstances. Multiple studies have investigated the use of machine learning (ML) models for non-invasive differentiation of glioma from brain metastasis. Many of the studies report promising classification results, however, to date, none have been implemented into clinical practice. After a screening of 12,470 studies, we included 29 eligible studies in our systematic review. From each study, we aggregated data on model design, development, and best classifiers, as well as quality of reporting according to the TRIPOD statement. In a subset of eligible studies, we conducted a meta-analysis of the reported AUC. It was found that data predominantly originated from single-center institutions (n = 25/29) and only two studies performed external validation. The median TRIPOD adherence was 0.48, indicating insufficient quality of reporting among surveyed studies. Our findings illustrate that despite promising classification results, reliable model assessment is limited by poor reporting of study design and lack of algorithm validation and generalizability. Therefore, adherence to quality guidelines and validation on outside datasets is critical for the clinical translation of ML for the differentiation of glioma and brain metastasis.

1 February 2024 in Journal of Clinical Oncology
Verified
Journal Article
Closed access
DHDaphne A. Haas-Kogan
Daphne A. Haas-Kogan
MAMariam S. Aboian
Mariam S. Aboian
JMJane E. Minturn
Jane E. Minturn
SLSarah E.S. Leary
Sarah E.S. Leary
MAMohamed S. Abdelbaki
Mohamed S. Abdelbaki
SMSabine Mueller
Sabine Mueller
PURPOSE: The PNOC001 phase II single-arm trial sought to estimate progression-free survival (PFS) associated with everolimus therapy for progressive/recurrent pediatric low-grade glioma (pLGG) on the basis of phosphatidylinositol 3-kinase (PI3K)/AKT/mammalian target of rapamycin (mTOR) pathway activation as measured by phosphorylated-ribosomal protein S6 and to identify prognostic and predictive biomarkers. PATIENTS AND METHODS: Patients, age 3-21 years, with progressive/recurrent pLGG received everolimus orally, 5 mg/m2 once daily. Frequency of driver gene alterations was compared among independent pLGG cohorts of newly diagnosed and progressive/recurrent patients. PFS at 6 months (primary end point) and median PFS (secondary end point) were estimated for association with everolimus therapy. RESULTS: Between 2012 and 2019, 65 subjects with progressive/recurrent pLGG (median age, 9.6 years; range, 3.0-19.9; 46% female) were enrolled, with a median follow-up of 57.5 months. The 6-month PFS was 67.4% (95% CI, 60.0 to 80.0) and median PFS was 11.1 months (95% CI, 7.6 to 19.8). Hypertriglyceridemia was the most common grade ≥3 adverse event. PI3K/AKT/mTOR pathway activation did not correlate with clinical outcomes (6-month PFS, active 68.4% v nonactive 63.3%; median PFS, active 11.2 months v nonactive 11.1 months; P = .80). Rare/novel KIAA1549::BRAF fusion breakpoints were most frequent in supratentorial midline pilocytic astrocytomas, in patients with progressive/recurrent disease, and correlated with poor clinical outcomes (median PFS, rare/novel KIAA1549::BRAF fusion breakpoints 6.1 months v common KIAA1549::BRAF fusion breakpoints 16.7 months; P < .05). Multivariate analysis confirmed their independent risk factor status for disease progression in PNOC001 and other, independent cohorts. Additionally, rare pathogenic germline variants in homologous recombination genes were identified in 6.8% of PNOC001 patients. CONCLUSION: Everolimus is a well-tolerated therapy for progressive/recurrent pLGGs. Rare/novel KIAA1549::BRAF fusion breakpoints may define biomarkers for progressive disease and should be assessed in future clinical trials.