Decaying wood is related to nutrient cycling through its role as either a sink or source of nutrients. However, at micro scales, what is the effect of decaying logs on the physical, chemical, and biotic characteristics of the soil underneath? We took samples from a 0 to 5 cm depth under and a 50 cm distance away from decaying logs (Dacryodes excelsa and Swietenia macrophylla) at 2 stages of decay, and measured soil temperature, total and available nutrients, and root length in a tropical wet forest. We found decaying wood affected physical, chemical, and biotic properties of the underlying soil. Soil temperature was less variable under the decaying logs than away from the logs. Soil under the decaying wood had fewer roots, and lower NO₃⁻ and Mg²⁺ availability than samples collected a distance of 50 cm away from the logs. Tree species and decay stage were important factors defining the effect of decaying wood on the distribution of available nutrients. Ca²⁺, Mg²⁺, and K⁺ levels were higher in the soil associated with the youngest logs, and were higher near S. macrophylla logs. Heavy metals were also higher in the soil located near the younger logs independent of the species; other metal ions such as Al³⁺ and Fe³⁺ were higher in the soil associated with D. excelsa and the oldest logs. These results indicate decaying wood can contribute to and generate spatial heterogeneity of soil properties.

Decaying coarse woody debris can affect the underlying soil either by augmenting nutrients that can be exploited by tree roots, or by diminishing nutrient availability through stimulation of microbial nutrient immobilization. We analyzed C, N, microbial biomass C and root length in closely paired soil samples taken under versus 20–50 cm away from large trunks of two species felled by Hugo (1989) and Georges (1998) three times during wet and dry seasons over the two years following the study conducted by Georges. Soil microbial biomass, % C and % N were significantly higher under than away from logs felled by both hurricanes (i.e., 1989 and 1998), at all sampling times and at both depths (0–10 and 10–20 cm). Frass from wood boring beetles may contribute to early effects. Root length was greater away from logs during the dry season, and under logs in the wet season. Root length was correlated with microbial biomass C, soil N and soil moisture (R = 0.36, 0.18, and 0.27, respectively; all p values < 0.05). Microbial biomass C varied significantly among seasons but differences between positions (under vs. away) were only suggestive. Microbial C was correlated with soil N (R = 0.35). Surface soil on the upslope side of the logs had significantly more N and microbial biomass, likely from accumulation of leaf litter above the logs on steep slopes. We conclude that decaying wood can provide ephemeral resources that are exploited by tree roots during some seasons.

Progress in understanding changes in soil biology in response to latitude, elevation and disturbance gradients has generally lagged behind studies of above-ground plants and animals owing to methodological constraints and high diversity and complexity of interactions in below-ground food webs. New methods have opened research opportunities in below-ground systems, leading to a rapid increase in studies of below-ground organisms and processes. Here, we summarize results of forest soil biology research over the past 25 years in Puerto Rico as part of a 75th Anniversary Symposium on research of the USDA Forest Service International Institute of Tropical Forestry. These results are presented in the context of changes in soil and forest floor biota across latitudinal, elevation and disturbance gradients. Invertebrate detritivores in these tropical forests exerted a stronger influence on leaf decomposition than in cold temperate forests using a common substrate. Small changes in arthropods brought about using different litterbag mesh sizes induced larger changes in leaf litter mass loss and nutrient mineralization. Fungi and bacteria in litter and soil of wet forests were surprisingly sensitive to drying, leading to changes in nutrient cycling. Tropical fungi also showed sensitivity to environmental fluctuations and gradients as fungal phylotype composition in soil had a high turnover along an elevation gradient in Puerto Rico. Globally, tropical soil fungi had smaller geographic ranges than temperate fungi. Invertebrate activity accelerates decomposition of woody debris, especially in lowland dry forest, but invertebrates are also important in early stages of log decomposition in middle elevation wet forests. Large deposits of scoltine bark beetle frass from freshly fallen logs coincide with nutrient immobilization by soil microbial biomass and a relatively low density of tree roots in soil under newly fallen logs. Tree roots shifted their foraging locations seasonally in relation to decaying logs. Native earthworms were sensitive to disturbance and were absent from tree plantations, whereas introduced earthworms were found across elevation and disturbance gradients.