Introduction: Salt stress inhibits the beneficial effects of most plant growth-promoting rhizobacteria. The synergistic relationship between beneficial rhizosphere microorganisms and plants helps achieve more stable growth-promoting effects. This study aimed 1) to elucidate changes in gene expression profiles in the roots and leaves of wheat after inoculation with compound microbial agents and 2) to determine the mechanisms by which plant growth-promoting rhizobacteria mediate plant responses to microorganisms.Methods: Following inoculation with compound bacteria, transcriptome characteristics of gene expression profiles of wheat, roots, and leaves at the flowering stage were investigated using Illumina high-throughput sequencing technology. Gene ontology (GO) function and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed on the genes that were significantly differentially expressed.Results: The expression of 231 genes in the roots of bacterial preparations (BIO) -inoculated wheat changed significantly (including 35 upregulated and 196 downregulated genes) compared with that of non-inoculated wheat. The expression of 16,321 genes in leaves changed significantly, including 9651 upregulated genes and 6670 downregulated genes. The differentially expressed genes were involved in the metabolism of carbohydrates, amino acids, and secondary compounds as well as signal transduction pathways. The ethylene receptor 1 gene in wheat leaves was significantly downregulated, and genes related to ethylene-responsive transcription factor were significantly upregulated. GO enrichment analysis showed that metabolic and cellular processes were the main functions affected in the roots and leaves. The main molecular functions altered were binding and catalytic activities, among which the cellular oxidant detoxification enrichment rate was highly expressed in the roots. The expression of peroxisome size regulation was the highest in the leaves. KEGG enrichment analysis showed that linoleic acid metabolism expression was highest in the roots, and the expression of photosynthesis-antenna proteins was the highest in leaves. After inoculation with a complex biosynthesis agent, the phenylalanine ammonia lyase (PAL) gene of the phenylpropanoid biosynthesis pathway was upregulated in wheat leaf cells while 4CL, CCR, and CYP73A were downregulated. Additionally, CYP98A and REF1 genes involved in the flavonoid biosynthesis pathway were upregulated, while F5H, HCT, CCR, E2.1.1.104, and TOGT1-related genes were downregulated.Discussion: Differentially expressed genes may play key roles in improving salt tolerance in wheat. Compound microbial inoculants promoted the growth of wheat under salt stress and improved disease resistance by regulating the expression of metabolism-related genes in wheat roots and leaves and activating immune pathway-related genes.

Background and aims: Soil salinity negatively affects crop development. Halotolerant nitrogen-fixing bacteria (HNFB) and arbuscular mycorrhizal fungi (AMF) are essential microorganisms that enhance crop nutrient availability and salt tolerance in saline soils. Studying the impact of HNFB on AMF communities and using HNFB in biofertilizers can help in selecting the optimal HNFB-AMF combinations to improve crop productivity in saline soils.Methods: We established three experimental groups comprising apple plants treated with low-nitrogen (0 mg N/kg, N0), normal-nitrogen (200 mg N/kg, N1), and high-nitrogen (300 mg N/kg, N2) fertilizer under salt stress without bacteria (CK, with the addition of 1,500 mL sterile water +2 g sterile diatomite), or with bacteria [BIO, with the addition of 1,500 mL sterile water +2 g mixed bacterial preparation (including Bacillus subtilis HG-15 and Bacillus velezensis JC-K3)].Results: HNFB inoculation significantly increased microbial biomass and the relative abundance of beta-glucosidase-related genes in the rhizosphere soil under identical nitrogen application levels (p < 0.05). High-nitrogen treatment significantly reduced AMF diversity and the relative abundance of beta-glucosidase, acid phosphatase, and urea-related genes. A two-way analysis of variance showed that combined nitrogen application and HNFB treatment could significantly affect soil physicochemical properties and rhizosphere AMF abundance (p < 0.05). Specifically, HNFB application resulted in a significantly higher relative abundance of Glomus-MO-G17-VTX00114 compared to that in the CK group at equal nitrogen levels.Conclusion: The impact of HNFB on the AMF community in apple rhizospheres is influenced by soil nitrogen levels. The study reveals how varying nitrogen levels mediate the relationship between exogenous HNFB, soil properties, and rhizosphere microbes.

Background and aims: Black locust (Robinia pseudoacacia L.) plantations transition from seedling to multi-generation coppice systems, leading to declines in productivity and biodiversity. However, the structural and functional reorganization of soil fungal communities during this transition remains poorly understood. This study aimed to characterize fungal community dynamics across successional stages of black locust stands and assess their implications for soil health and ecosystem resilience.Methods: Soil fungal communities in three black locust stands (first-generation seedling forest, first- and second-generation coppice forests) were analyzed over one year using ITS high-throughput sequencing. We evaluated fungal diversity, guild composition, and co-occurrence networks, integrating statistical analyses (PERMANOVA, ANOSIM, FUNGuild) and network theory to assess seasonal and successional shifts.Results: Fungal richness and diversity remained stable across stand types and seasons. However, these factors dramatically altered the soil fungal community structure. Shifts in fungal community composition were observed from seedling to coppice stands: Ascomycota dominance decreased (72.9 to 57.9%), while Basidiomycota increased (6.5 to 11.6%). Significant changes in the relative abundance of certain fungal guilds were observed by both stand conversion and seasonal variation (p < 0.05). However, the overall fungal guilds composition was only significantly affected by the seasonal variation, rather than stand conversion (p > 0.05). Furthermore, saprotrophic fungi dominated in autumn/winter (66.49–76.01%), whereas symbiotic fungi peaked in spring (up to 7.27%). As forests transition from seeding to coppice stands, the percentage of negative edges, average degree, and relative modularity of the fungal community co-occurrence networks all gradually decreased. Those suggested that the conversion of black locust stands decreased the connectivity between fungal species, formed less organized structure, increased homogeneity of function among microbial communities, reduced ecological functionality, and decreased resistance to environmental changes. Seasonal temperature fluctuations further modulated network complexity, with summer samples showing heightened edge density but reduced cooperation.Conclusion: Our findings suggest that the conversion of forests can significantly shift the soil fungal community structure and assembly, favoring Basidiomycota over Ascomycota and reducing network stability. These shifts signal progressive soil nutrient depletion and functional homogenization, potentially compromising ecosystem resilience. Seasonal guild dynamics highlight fungi’s role in nutrient cycling, with saprotrophs driving litter decomposition in colder months. This understanding suggest that forest management practices must prioritise the preservation of early successional stages. This is vital to support diverse fungal communities and complex community networks and ensure the stability, functionality and resistance of fungal communities. Restoration efforts must focus on promoting fungal resilience through targeted soil amendments and habitat diversification to enhance ecosystem stability and functionality.

Microorganisms play a crucial role in litter decomposition in terrestrial ecosystems. The leaf and fine root litters of Robinia pseudoacacia Linn., Quercus acutissima Carr., Pinus tabulaeformis Carr. and Pinus densiflora Sieb. were analysed using the nylon litter bag method and Illumina MiSeq high-throughput sequencing for the amplification of bacterial 16S rRNA V4–V5. We assessed the effects of leaf and root litter species on the bacterial community after one year’s decomposition. The results showed that (1) the remaining mass of fine root litter was smaller than that of the leaf litter for R. pseudoacacia and Q. acutissima, while the opposite result was found for P. tabulaeformis and P. densiflora. (2) The bacterial community structure in leaf litter was most highly correlated with the initial N content and N:P, while that in fine roots was most highly correlated with the lignin content. (3) The bacterial phyla Bacteroidetes, Acidobacteria and Gemmatimonadetes were significantly affected by litter and species, whereas the relative abundances of Firmicutes and Chloroflexi were only affected by litter tissues. The relative abundances of Acidobacteria, Firmicutes and Chloroflexi in fine root litter were higher than those in leaf litter, while the opposite result was found for Bacteroidetes. The bacterial genera Burkholderia-Paraburkholderia, Sphingomonas and Mucilaginibacter were affected by litter tissues (p < 0.05). The relative abundance of Burkholderia-Paraburkholderia in fine root litter was higher than that in leaf litter, while the opposite result was found for Bradyrhizobium, Sphingomonas and Mucilaginibacter. Pearson’s correlation analysis showed that the relative abundances of the dominant phyla and genera were affected by the initial litter properties, especially for Bacteroides, Acidobacteria, Burkholderia and Sphingomonas. These findings indicate that litter tissues and their interactions with species are more important than the species in shaping the bacterial diversity and community composition, which was affected by the initial chemical properties of the litter.

Litter decomposition is a key step in global biogeochemical cycling. In forest ecosystems, litters from different tree species often decompose together. Although species diversity is widely acknowledged to accelerate decomposition through the regulation of nutrient transfer between litter and decomposer communities, the underlying mechanism remains unclear. To explore the association between the bacterial community and mixed-litter chemical transformation, we conducted a one-year litter mixing decomposition experiment using leaf litter from four dominant tree species in Mount Tai (Eastern China), Robinia pseudoacacia, Quercus acutissima, Pinus tabulaeformis, and Pinus densiflora. Our results showed that 1) Mass loss of leaf litter mixtures was significantly faster than that of leaf litter monocultures, except for R. pseudoacacia. Litter mixtures without R. pseudoacacia showed non-additive synergistic effects, whereas litter mixtures with R. pseudoacacia exerted additive effects. 2) Litter species in the absence of R. pseudoacacia significantly decreased the nutrient retention rates of litter mixtures compared to those of monocultures. 3) Litter mixtures with or without R. pseudoacacia showing additive and non-additive effects in monocultures had a distinct bacterial community structure. 4) Bacterial community structure was also modified by initial litter traits; carbon (C), nitrogen (N), and phosphorus (P) concentrations in monocultures; N/P and C/N ratios of mixtures with R. pseudoacacia; and the lignin/N ratio of mixtures without R. pseudoacacia. Overall, these findings indicate that tree species diversity controls decomposition and nutrient cycling, implying that an appropriate species community composition is beneficial to maintaining forest ecosystems.

The ecological impact of nitrogen (N) deposition has gained significance since the advent of the industrial revolution. Although numerous studies have examined the impact of N deposition on soil organic carbon (SOC), certain arid and barren rocky mountainous regions, which experience more pronounced N limitations, have been overlooked. This study was conducted in the Yimeng Mountains, examining eight treatments created by four N addition levels (0 kg N ha⁻¹ yr⁻¹, 50 kg N ha⁻¹ yr⁻¹, 100 kg N ha⁻¹ yr⁻¹ and 200 kg N ha⁻¹ yr⁻¹) and two tree species (Quercus acutissima Carruth. and Pinus thunbergii Parl.). The research revealed variations in the effect of N addition on leaf litter decomposition and SOC density (SOCD) between different tree species. Notably, N addition stimulated the decomposition of leaf litter from Quercus acutissima Carruth. However, the decomposition of Pinus thunbergii Parl. leaf litter was enhanced at N addition levels below 100 kg N ha⁻¹ yr⁻¹, while it was hindered at levels exceeding 100 kg N ha⁻¹ yr⁻¹. In the Quercus acutissima Carruth. forest, the N addition levels of 50 kg N ha⁻¹ yr⁻¹, 100 kg N ha⁻¹ yr⁻¹ and 200 kg N ha⁻¹ yr⁻¹ resulted in decreases in SOCD by 10.57%, 22.22% and 13.66%, respectively, compared to 0 kg N ha⁻¹ yr⁻¹. In the Pinus thunbergii Parl. forest, the N addition levels of 50 kg N ha⁻¹ yr⁻¹, 100 kg N hm⁻² ha⁻¹ and 200 kg N ha⁻¹ yr⁻¹ led to increases in SOCD by 49.53%, 43.36% and 60.87%, respectively, compared to 0 kg N ha⁻¹ yr⁻¹. Overall, N addition decreases the SOCD of Quercus acutissima Carruth., but it increases the SOCD of Pinus thunbergii Parl., attributed to the alteration in soil enzyme stoichiometry and nutrient cycling by N addition. This study fills a theoretical gap concerning leaf litter decomposition and SOC sequestration in arid and barren rocky mountainous regions under global climate change.