Sebastien Benzekry

Dr. Sebastien Benzekry

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 August 2014 in PLOS Computational Biology
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SBSebastien Benzekry
Sebastien Benzekry
CLClare Lamont
Clare Lamont
ABAfshin Beheshti
Afshin Beheshti
ATAmanda Tracz
Amanda Tracz
JEJohn M L Ebos
John M L Ebos
PHPhilip Hahnfeldt
Philip Hahnfeldt
Despite internal complexity, tumor growth kinetics follow relatively simple laws that can be expressed as mathematical models. To explore this further, quantitative analysis of the most classical of these were performed. The models were assessed against data from two in vivo experimental systems: an ectopic syngeneic tumor (Lewis lung carcinoma) and an orthotopically xenografted human breast carcinoma. The goals were threefold: 1) to determine a statistical model for description of the measurement error, 2) to establish the descriptive power of each model, using several goodness-of-fit metrics and a study of parametric identifiability, and 3) to assess the models' ability to forecast future tumor growth. The models included in the study comprised the exponential, exponential-linear, power law, Gompertz, logistic, generalized logistic, von Bertalanffy and a model with dynamic carrying capacity. For the breast data, the dynamics were best captured by the Gompertz and exponential-linear models. The latter also exhibited the highest predictive power, with excellent prediction scores (≥80%) extending out as far as 12 days in the future. For the lung data, the Gompertz and power law models provided the most parsimonious and parametrically identifiable description. However, not one of the models was able to achieve a substantial prediction rate (≥70%) beyond the next day data point. In this context, adjunction of a priori information on the parameter distribution led to considerable improvement. For instance, forecast success rates went from 14.9% to 62.7% when using the power law model to predict the full future tumor growth curves, using just three data points. These results not only have important implications for biological theories of tumor growth and the use of mathematical modeling in preclinical anti-cancer drug investigations, but also may assist in defining how mathematical models could serve as potential prognostic tools in the clinic. Tumor growth curves display relatively simple time curves that can be quantified using mathematical models. Herein we exploited two experimental animal systems to assess the descriptive and predictive power of nine classical tumor growth models. Several goodness-of-fit metrics and a dedicated error model were employed to rank the models for their relative descriptive power. We found that the model with the highest descriptive power was not necessarily the most predictive one. The breast growth curves had a linear profile that allowed good predictability. Conversely, not one of the models was able to accurately predict the lung growth curves when using only a few data points. To overcome this issue, we considered a method that uses the parameter population distribution, informed from a priori knowledge, to estimate the individual parameter vector of an independent growth curve. This method was found to considerably improve the prediction success rates. These findings may benefit preclinical cancer research by identifying models most descriptive of fundamental growth characteristics. Clinical perspective is also offered on what can be expected from mathematical modeling in terms of future growth prediction.

31 August 2016 in Cancer Research
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RSRaphael Serre
Raphael Serre
SBSebastien Benzekry
Sebastien Benzekry
LPLaetitia Padovani
Laetitia Padovani
CMChristophe Meille
Christophe Meille
NANicolas André
Nicolas André
DBDominique Barbolosi
Dominique Barbolosi
Combining radiotherapy with immune checkpoint blockade may offer considerable therapeutic impact if the immunosuppressive nature of the tumor microenvironment (TME) can be relieved. In this study, we used mathematical models, which can illustrate the potential synergism between immune checkpoint inhibitors and radiotherapy. A discrete-time pharmacodynamic model of the combination of radiotherapy with inhibitors of the PD1–PDL1 axis and/or the CTLA4 pathway is described. This mathematical framework describes how a growing tumor first elicits and then inhibits an antitumor immune response. This antitumor immune response is described by a primary and a secondary (or memory) response. The primary immune response appears first and is inhibited by the PD1–PDL1 axis, whereas the secondary immune response happens next and is inhibited by the CTLA4 pathway. The effects of irradiation are described by a modified version of the linear-quadratic model. This modeling offers an explanation for the reported biphasic relationship between the size of a tumor and its immunogenicity, as measured by the abscopal effect (an off-target immune response). Furthermore, it explains why discontinuing immunotherapy may result in either tumor recurrence or a durably sustained response. Finally, it describes how synchronizing immunotherapy and radiotherapy can produce synergies. The ability of the model to forecast pharmacodynamic endpoints was validated retrospectively by checking that it could describe data from experimental studies, which investigated the combination of radiotherapy with immune checkpoint inhibitors. In summary, a model such as this could be further used as a simulation tool to facilitate decision making about optimal scheduling of immunotherapy with radiotherapy and perhaps other types of anticancer therapies. Cancer Res; 76(17); 4931–40. ©2016 AACR.

25 February 2020 in PLOS Computational Biology
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CVCristina Vaghi
Cristina Vaghi
ARAnne Rodallec
Anne Rodallec
RFRaphaëlle Fanciullino
Raphaëlle Fanciullino
Joseph CiccoliniJoseph Ciccolini
Joseph Ciccolini
Jonathan MochelJonathan Mochel
Jonathan Mochel
SBSebastien Benzekry
Sebastien Benzekry
Tumor growth curves are classically modeled by means of ordinary differential equations. In analyzing the Gompertz model several studies have reported a striking correlation between the two parameters of the model, which could be used to reduce the dimensionality and improve predictive power. We analyzed tumor growth kinetics within the statistical framework of nonlinear mixed-effects (population approach). This allowed the simultaneous modeling of tumor dynamics and inter-animal variability. Experimental data comprised three animal models of breast and lung cancers, with 833 measurements in 94 animals. Candidate models of tumor growth included the exponential, logistic and Gompertz models. The exponential and—more notably—logistic models failed to describe the experimental data whereas the Gompertz model generated very good fits. The previously reported population-level correlation between the Gompertz parameters was further confirmed in our analysis (R2> 0.92 in all groups). Combining this structural correlation with rigorous population parameter estimation, we propose a reduced Gompertz function consisting of a single individual parameter (and one population parameter). Leveraging the population approach using Bayesian inference, we estimated times of tumor initiation using three late measurement timepoints. The reduced Gompertz model was found to exhibit the best results, with drastic improvements when using Bayesian inference as compared to likelihood maximization alone, for both accuracy and precision. Specifically, mean accuracy (prediction error) was 12.2% versus 78% and mean precision (width of the 95% prediction interval) was 15.6 days versus 210 days, for the breast cancer cell line. These results demonstrate the superior predictive power of the reduced Gompertz model, especially when combined with Bayesian estimation. They offer possible clinical perspectives for personalized prediction of the age of a tumor from limited data at diagnosis. The code and data used in our analysis are publicly available at https://github.com/cristinavaghi/plumky. Mathematical models for tumor growth kinetics have been widely used since several decades but mostly fitted to individual or average growth curves. Here we compared three classical models (exponential, logistic and Gompertz) using a population approach, which accounts for inter-animal variability. The exponential and the logistic models failed to fit the experimental data while the Gompertz model showed excellent descriptive power. Moreover, the strong correlation between the two parameters of the Gompertz equation motivated a simplification of the model, the reduced Gompertz model, with a single individual parameter and equal descriptive power. Combining the mixed-effects approach with Bayesian inference, we predicted the age of individual tumors with only few late measurements. Thanks to its simplicity, the reduced Gompertz model showed superior predictive power. Although our method remains to be extended to clinical data, these results are promising for the personalized estimation of the age of a tumor from limited measurements at diagnosis.

18 June 2020 in Clinical Pharmacology & Therapeutics
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SBSebastien Benzekry
Sebastien Benzekry

1 December 2015 in Seminars in Cancer Biology
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SBSebastien Benzekry
Sebastien Benzekry
EPEddy Pasquier
Eddy Pasquier
DBDominique Barbolosi
Dominique Barbolosi
BLBruno Lacarelle
Bruno Lacarelle
FBFabrice Barlési
Fabrice Barlési
Joseph CiccoliniJoseph Ciccolini
Joseph Ciccolini

31 January 2016 in Cancer Research
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SBSebastien Benzekry
Sebastien Benzekry
ATAmanda Tracz
Amanda Tracz
MMMichalis Mastri
Michalis Mastri
RCRyan Corbelli
Ryan Corbelli
DBDominique Barbolosi
Dominique Barbolosi
JEJohn M.L. Ebos
John M.L. Ebos
Rapid improvements in the detection and tracking of early-stage tumor progression aim to guide decisions regarding cancer treatments as well as predict metastatic recurrence in patients following surgery. Mathematical models may have the potential to further assist in estimating metastatic risk, particularly when paired with in vivo tumor data that faithfully represent all stages of disease progression. Herein, we describe mathematical analysis that uses data from mouse models of spontaneous metastasis developing after surgical removal of orthotopically implanted primary tumors. Both presurgical (primary tumor) growth and postsurgical (metastatic) growth were quantified using bioluminescence and were then used to generate a mathematical formalism based on general laws of the disease (i.e., dissemination and growth). The model was able to fit and predict pre/postsurgical data at the level of the individual as well as the population. Our approach also enabled retrospective analysis of clinical data describing the probability of metastatic relapse as a function of primary tumor size. In these data-based models, interindividual variability was quantified by a key parameter of intrinsic metastatic potential. Critically, our analysis identified a highly nonlinear relationship between primary tumor size and postsurgical survival, suggesting possible threshold limits for the utility of tumor size as a predictor of metastatic recurrence. These findings represent a novel use of clinically relevant models to assess the impact of surgery on metastatic potential and may guide optimal timing of treatments in neoadjuvant (presurgical) and adjuvant (postsurgical) settings to maximize patient benefit. Cancer Res; 76(3); 535–47. ©2015 AACR.