Cheng Lei

Prof. Dr. Cheng Lei


Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 July 2018 in Nature Protocols
Verified
Journal Article
Closed access
PDF file
CLCheng Lei
Cheng Lei
HKHirofumi Kobayashi
Hirofumi Kobayashi
YWYi Wu
Yi Wu
Ming LiMing Li
Ming Li
AIAkihiro Isozaki
Akihiro Isozaki
KGKeisuke Goda
Keisuke Goda

3 July 2020 in Lab on a Chip
Verified
Journal Article
Closed access
PDF file
AIAkihiro Isozaki
Akihiro Isozaki
JHJeffrey Harmon
Jeffrey Harmon
YZYuqi Zhou
Yuqi Zhou
SLShuai Li
Shuai Li
YNYuta Nakagawa
Yuta Nakagawa
KGKeisuke Goda
Keisuke Goda
Artificial intelligence (AI) has dramatically changed the landscape of science, industry, defence, and medicine in the last several years. Supported by considerably enhanced computational power and cloud storage, the field of AI has shifted from mostly theoretical studies in the discipline of computer science to diverse real-life applications such as drug design, material discovery, speech recognition, self-driving cars, advertising, finance, medical imaging, and astronomical observation, where AI-produced outcomes have been proven to be comparable or even superior to the performance of human experts. In these applications, what is essentially important for the development of AI is the data needed for machine learning. Despite its prominent importance, the very first process of the AI development, namely data collection and data preparation, is typically the most laborious task and is often a limiting factor of constructing functional AI algorithms. Lab-on-a-chip technology, in particular microfluidics, is a powerful platform for both the construction and implementation of AI in a large-scale, cost-effective, high-throughput, automated, and multiplexed manner, thereby overcoming the above bottleneck. On this platform, high-throughput imaging is a critical tool as it can generate high-content information (e.g., size, shape, structure, composition, interaction) of objects on a large scale. High-throughput imaging can also be paired with sorting and DNA/RNA sequencing to conduct a massive survey of phenotype–genotype relations whose data is too complex to analyze with traditional computational tools, but is analyzable with the power of AI. In addition to its function as a data provider, lab-on-a-chip technology can also be employed to implement the developed AI for accurate identification, characterization, classification, and prediction of objects in mixed, heterogeneous, or unknown samples. In this review article, motivated by the excellent synergy between AI and lab-on-a-chip technology, we outline fundamental elements, recent advances, future challenges, and emerging opportunities of AI with lab-on-a-chip technology or “AI on a chip” for short.

29 September 2017 in Scientific Reports
Verified
Journal Article
Open access
PDF file
HKHirofumi Kobayashi
Hirofumi Kobayashi
CLCheng Lei
Cheng Lei
YWYi Wu
Yi Wu
AMAilin Mao
Ailin Mao
YJYiyue Jiang
Yiyue Jiang
KGKeisuke Goda
Keisuke Goda
In the last decade, high-content screening based on multivariate single-cell imaging has been proven effective in drug discovery to evaluate drug-induced phenotypic variations. Unfortunately, this method inherently requires fluorescent labeling which has several drawbacks. Here we present a label-free method for evaluating cellular drug responses only by high-throughput bright-field imaging with the aid of machine learning algorithms. Specifically, we performed high-throughput bright-field imaging of numerous drug-treated and -untreated cells (N = ~240,000) by optofluidic time-stretch microscopy with high throughput up to 10,000 cells/s and applied machine learning to the cell images to identify their morphological variations which are too subtle for human eyes to detect. Consequently, we achieved a high accuracy of 92% in distinguishing drug-treated and -untreated cells without the need for labeling. Furthermore, we also demonstrated that dose-dependent, drug-induced morphological change from different experiments can be inferred from the classification accuracy of a single classification model. Our work lays the groundwork for label-free drug screening in pharmaceutical science and industry.

31 May 2024 in IEEE Transactions on Geoscience and Remote Sensing
Verified
Journal Article
Closed access
LMLiye Mei
Liye Mei
ZYZhaoyi Ye
Zhaoyi Ye
CXChuan Xu
Chuan Xu
HWHongzhu Wang
Hongzhu Wang
YWying wang
ying wang
YLYansheng Li
Yansheng Li
Semantic change detection (SCD) has gradually emerged as a prominent research focus in remote sensing image processing due to its critical role in earth observation applications. In view of its powerful semantic-driven feature extraction capability, the Segment Anything Model (SAM) has demonstrated its suitability across various visual scenes. However, it suffers from significant performance degradation when confronted with remote sensing images, especially those containing various ground objects that possess significant inter-class similarity and substantial intra-class variations. To address the above issues, we propose SCD-SAM, aiming to leverage the potent visual recognition capabilities of SAM for enhanced accuracy and robustness in SCD. Specifically, we introduce a contextual semantic change-aware dual encoder that combines MobileSAM and CNN to extract progressive semantic change features in parallel, and inject local features into the MobileSAM encoder through depth feature interaction to compensate for the Transformer’s limitations in perceiving local semantic details. Besides, in order to utilize the strong visual feature extraction capability of MobileSAM in remote sensing images, we propose a semantic adaptor that aggregates semantic-oriented information about changing objects. To better integrate the extracted contextual semantic information, we devise a progressive feature aggregation dual decoder that aggregates binary change features and semantic change features respectively, alleviating the semantic gap across different scales. The quantitative and visual results show that SCD-SAM outperforms the state-of-the-art SCD methods on publicly open SCD datasets (e.g., SECOND-CD and Landsat-CD). The code will be made available at https://github.com/yzygit1230/SCD-SAM.

12 May 2020 in eLife
Verified
Journal Article
Open access
YZYuqi Zhou
Yuqi Zhou
AYAtsushi Yasumoto
Atsushi Yasumoto
CLCheng Lei
Cheng Lei
CHChun-Jung Huang
Chun-Jung Huang
HKHirofumi Kobayashi
Hirofumi Kobayashi
KGKeisuke Goda
Keisuke Goda
Platelets are anucleate cells in blood whose principal function is to stop bleeding by forming aggregates for hemostatic reactions. In addition to their participation in physiological hemostasis, platelet aggregates are also involved in pathological thrombosis and play an important role in inflammation, atherosclerosis, and cancer metastasis. The aggregation of platelets is elicited by various agonists, but these platelet aggregates have long been considered indistinguishable and impossible to classify. Here we present an intelligent method for classifying them by agonist type. It is based on a convolutional neural network trained by high-throughput imaging flow cytometry of blood cells to identify and differentiate subtle yet appreciable morphological features of platelet aggregates activated by different types of agonists. The method is a powerful tool for studying the underlying mechanism of platelet aggregation and is expected to open a window on an entirely new class of clinical diagnostics, pharmacometrics, and therapeutics.

19 June 2017 in Lab on a Chip
Verified
Journal Article
Closed access
PDF file
YJYiyue Jiang
Yiyue Jiang
CLCheng Lei
Cheng Lei
AYAtsushi Yasumoto
Atsushi Yasumoto
HKHirofumi Kobayashi
Hirofumi Kobayashi
YAYuri Aisaka
Yuri Aisaka
KGKeisuke Goda
Keisuke Goda
According to WHO, about 10 million new cases of thrombotic disorders are diagnosed worldwide every year. Thrombotic disorders, including atherothrombosis (the leading cause of death in the US and Europe), are induced by occlusion of blood vessels, due to the formation of blood clots in which aggregated platelets play an important role. The presence of aggregated platelets in blood may be related to atherothrombosis (especially acute myocardial infarction) and is, hence, useful as a potential biomarker for the disease. However, conventional high-throughput blood analysers fail to accurately identify aggregated platelets in blood. Here we present an in vitro on-chip assay for label-free, single-cell image-based detection of aggregated platelets in human blood. This assay builds on a combination of optofluidic time-stretch microscopy on a microfluidic chip operating at a high throughput of 10 000 blood cells per second with machine learning, enabling morphology-based identification and enumeration of aggregated platelets in a short period of time. By performing cell classification with machine learning, we differentiate aggregated platelets from single platelets and white blood cells with a high specificity and sensitivity of 96.6% for both. Our results indicate that the assay is potentially promising as predictive diagnosis and therapeutic monitoring of thrombotic disorders in clinical settings.