Horticultural plants, in particular fruit trees, berry crops, and ornamentals, are valuable objects for studying their genetic and biochemical properties. Along with traditional methods of studying these plants, modern molecular genetic technologies are emerging, in particular genome editing using CRISPR/Cas9 nucleases. In this review, we have analyzed modern advances in genome editing of horticultural plants. To date, it has become possible to improve many plant characteristics using this technology, e.g., making plants resistant to biotic and abiotic stress factors, changing the time of flowering and fruit ripening, changing the growth characteristics of plants, as well as the taste properties of their fruits. CRISPR/Cas9 genome editing has been successfully carried out for many horticultural plants. Dozens of genes from these plants have been modified by means of genome editing technology. We have considered the main ways of delivering genetic constructs to plants as well as limitations that complicate the editing of target genes. The article reviews the prospects of using genome editing to improve the valuable properties of plants important to humans.

‘Isabel’ grape (Vitis labrusca x V. vinifera L. hybrid) is one of the main grape cultivars in Russia and some other countries for processing, due to its vigor, tolerance to the main fungal diseases, high yield and potential for sugar accumulation. The stilbene synthase gene VlvSTS was isolated from the hybrid grape cv. Isabel and cloned into a pSS plant transformation vector under the control of a constitutive 35S RNA double promoter of the cauliflower mosaic virus, CaMV 35SS. VlvSTS-gene containing transgenic tobacco lines were obtained and analyzed. For the first time plants expressing the VlvSTS gene were shown to have an enhanced resistance to the bacterial pathogen Erwinia carotovora subsp. carotovora B15. Transgenic plants were tested for resistance to a number of fungal pathogens. The plants were resistant to the grey mould fungus Botrytis cinerea, but not to the fungi Fusarium oxysporum, F. sporotrichioides, or F. culmorum. According to the results of a high performance liquid chromatography-mass spectrometry analysis, the amount of trans-resveratrol in leaves of transgenic plants with the highest expression of the VlvSTS gene was in a range from 150 to 170 μg/g of raw biomass. Change in the color and a decreased anthocyanin content in the flower corollas of transgenic plants were observed in transgenic lines with the highest expression of VlvSTS. A decrease in total flavonoid content was found in the flower petals but not the leaves of these tobacco lines. High expression of the VlvSTS gene influenced pollen development and seed productivity in transgenic plants. The size of pollen grains increased, while their total number per anther decreased. A decrease in the number of fertile pollen grains resulted in a decreased average weight of a seed boll in transgenic plants.

A genomic analysis of the hydrocarbon-oxidizing strain R. qingshengii F2-2 was conducted to characterize the genes responsible for plant growth stimulation and phytopathogen biocontrol. Understanding these mechanisms is vital for developing effective phytoremediation approaches. It was shown that the F2-2 genome consists of a 6.3 Mb chromosome and three plasmids, two of which are linear—pLP156 (155 kb) and pLP337 (337 kb)—and one circular—pCP209 (210 kb). The genes responsible for biosynthesis of phytohormones (auxins, gibberellins, cytokinins), phosphate solubilization, and production of siderophores and antibiotic-active compounds (chloramphenicol and pristinamycin IA) were identified in the strain chromosome. Orthologous genes encoding phenazine antibiotics were found in the linear plasmid pLP156. The phytostimulating properties of the strain, associated with auxin production (2–4 μg/mL); the ability to effectively colonize rapeseed, mustard, and tobacco plants; and protective action against Fusarium spp. under artificial phytopathogenic background conditions, were experimentally confirmed. Thus, the discovered properties of the R. qingshengii F2-2 strain indicate its potential for the phytoremediation of oil-contaminated soils.

The effect of a coating material containing organic photoluminophore (PL) on the growth and development of mustard Brassica juncea L. plants colonized with beneficial associative bacteria Pseudomonas putida KT2442 and Rhodococcus erythropolis X5 was studied in vitro and in vivo. Plants grown with the use of microbial bacterization in combination with a photoluminophore coating (PLC) had significantly faster growth rates in vitro (2.1 times faster, P. putida; 1.8 times faster, R. erythropolis) than those grown using PLC alone (1.2 times faster). The leaves of plants grown with PLC had higher contents of glucose and fructose (28.4 ± 0.3% more glucose and 60.4 ± 0.3% more fructose accumulated compared to plants grown without PLC). It was found that seed weights and seed number increased 1.9-fold and 1.6-fold, respectively, for plants grown with PLC and colonized with beneficial P. putida KT2442 bacteria. The stimulatory effect of PLC on photosynthetic parameters of Photosystem II (PSII) was observed in colonized plants grown in vitro. For the first time, it was shown that providing plants with a PLC for only 4 weeks may make it possible to support further plant growth without PLC to obtain higher yields in the future. Thus, PLCs that convert shorter-wavelength radiation into red light may induce enhancement of biochemical processes not only in plants but also in microorganisms that supply plants with growth regulators and other active compounds. The results indicate the need for further research to understand the mechanisms of photobiological and photoregulatory systems in the interaction of microbes and plants.

Nowadays, there is growing interest in new compositions and drugs that can preserve and maintain human health. There are many studies on both known probiotics and new sources of biologically active substances which may potentially be new avenues for human longevity. Here, we describe the protective effect of cell lysates of the relict bacteria Bacillus sp. F (Bacilus Lyuba), isolated from the ancient permafrost of Central Yakutia, upon DNA damage, induced by hydrogen peroxide. The DNA damage was monitored by a comet assay in leukocytes isolated from the peripheral blood of experimental animals (BALB/c mice). Cell lysates were prepared using the French Press and ultrasonic treatment. The levels of DNA damage in the presence of bacterial lysates upon the stress test (20 μM hydrogen peroxide for 10 min at 37°C) were almost twice lower, compared with the buffer control. Of note, the maximal protective effect was observed in the temperature range of 50°C–60°C; with the increase of the temperature, this effect vanished. The obtained results do not give a clear answer on the mechanism of the protective properties of Bacillus sp. F. (Bacilus Lyuba) lysates. To answer this question, a detailed analysis of the protein composition of bacterial lysate at different temperatures should be performed.

The self-purification capacity of oil-contaminated soils is largely determined by the metabolic activity of autochthonous oil-oxidizing microorganisms. This study examined three strains of actinobacteria, which are hydrocarbon degraders, isolated from oil-contaminated sierozem soil at the Daulet Asia landfill (Southern Kazakhstan). Functional gene analysis was conducted (genome completeness > 98%, and contamination < 3%), and the phenotypic properties of these bacterial strains were studied to assess their potential for bio- and phytoremediation technologies in the sharply continental arid climate of the Aral Sea region. The isolated strains Rhodococcus kroppenstedtii K18 and MF2 and Kocuria rosea K1 grow on oil (12–22% oil loss after 10 days of cultivation in liquid mineral salt medium) and diesel fuel and can utilize hexadecane and benzoate as the sole source of carbon and energy. Furthermore, Rhodococcus K18 and MF2 utilize dodecane and eicosane, while K. rosea K1 utilizes phenol and gentisate. A significant decrease in surface tension (to 31.4 mN/m) observed during cultivation of strains K18 and MF2 on minimal salt medium indicates the secretion of surfactants that increase the bioavailability of hydrophobic substrates. The studied strains possess a number of properties that promote plant growth: they produce auxins, solubilize calcium hydroxyapatite, and protect plants from infection by the phytopathogenic microorganisms Fusarium oxysporum and Pectobacterium wasabiae. Actinobacteria are compatible when co-cultivated, as no mutual growth inhibition was observed. This study expands our understanding of typical bacterial representatives of desert soil, and this may contribute to the development of bioremediation approaches for the restoration of disturbed biotopes under extreme environmental conditions.