Timothee Levi

Dr. Timothee Levi

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 April 2024 in Nature Communications
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TOTatsuya Osaki
Tatsuya Osaki
TDTomoya Duenki
Tomoya Duenki
SCSiu Yu A. Chow
Siu Yu A. Chow
Yasuhiro IkegamiYasuhiro Ikegami
Yasuhiro Ikegami
RBRomain Beaubois
Romain Beaubois
YIYoshiho Ikeuchi
Yoshiho Ikeuchi
An inter-regional cortical tract is one of the most fundamental architectural motifs that integrates neural circuits to orchestrate and generate complex functions of the human brain. To understand the mechanistic significance of inter-regional projections on development of neural circuits, we investigated an in vitro neural tissue model for inter-regional connections, in which two cerebral organoids are connected with a bundle of reciprocally extended axons. The connected organoids produced more complex and intense oscillatory activity than conventional or directly fused cerebral organoids, suggesting the inter-organoid axonal connections enhance and support the complex network activity. In addition, optogenetic stimulation of the inter-organoid axon bundles could entrain the activity of the organoids and induce robust short-term plasticity of the macroscopic circuit. These results demonstrated that the projection axons could serve as a structural hub that boosts functionality of the organoid-circuits. This model could contribute to further investigation on development and functions of macroscopic neuronal circuits in vitro.

15 December 2021 in Communications Physics
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TLTimothée Leleu
Timothée Leleu
FKFarad Khoyratee
Farad Khoyratee
TLTimothee Levi
Timothee Levi
RHRyan Hamerly
Ryan Hamerly
TKTakashi Kohno
Takashi Kohno
KAKazuyuki Aihara
Kazuyuki Aihara
The development of physical simulators, called Ising machines, that sample from low energy states of the Ising Hamiltonian has the potential to transform our ability to understand and control complex systems. However, most of the physical implementations of such machines have been based on a similar concept that is closely related to relaxational dynamics such as in simulated, mean-field, chaotic, and quantum annealing. Here we show that dynamics that includes a nonrelaxational component and is associated with a finite positive Gibbs entropy production rate can accelerate the sampling of low energy states compared to that of conventional methods. By implementing such dynamics on field programmable gate array, we show that the addition of nonrelaxational dynamics that we propose, called chaotic amplitude control, exhibits exponents of the scaling with problem size of the time to find optimal solutions and its variance that are smaller than those of relaxational schemes recently implemented on Ising machines.

1 September 2019 in iScience
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SBStefano Buccelli
Stefano Buccelli
YBYannick Bornat
Yannick Bornat
ICIlaria Colombi
Ilaria Colombi
MAMatthieu Ambroise
Matthieu Ambroise
LMLaura Martines
Laura Martines
Michela ChiappaloneMichela Chiappalone
Michela Chiappalone
Recent advances in bioelectronics and neural engineering allowed the development of brain machine interfaces and neuroprostheses, capable of facilitating or recovering functionality in people with neurological disability. To realize energy-efficient and real-time capable devices, neuromorphic computing systems are envisaged as the core of next-generation systems for brain repair. We demonstrate here a real-time hardware neuromorphic prosthesis to restore bidirectional interactions between two neuronal populations, even when one is damaged or missing. We used in vitro modular cell cultures to mimic the mutual interaction between neuronal assemblies and created a focal lesion to functionally disconnect the two populations. Then, we employed our neuromorphic prosthesis for bidirectional bridging to artificially reconnect two disconnected neuronal modules and for hybrid bidirectional bridging to replace the activity of one module with a real-time hardware neuromorphic Spiking Neural Network. Our neuroprosthetic system opens avenues for the exploitation of neuromorphic-based devices in bioelectrical therapeutics for health care.

24 April 2019 in Frontiers in Neuroscience
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FKFarad Khoyratee
Farad Khoyratee
FGFilippo Grassia
Filippo Grassia
SSSylvain Saïghi
Sylvain Saïghi
TLTimothee Levi
Timothee Levi
Neurological diseases can be studied by performing bio-hybrid experiments using a real-time biomimetic Spiking Neural Network (SNN) platform. The Hodgkin-Huxley model offers a set of equations including biophysical parameters which can serve as a base to represent different classes of neurons and affected cells. Also, connecting the artificial neurons to the biological cells would allow us to understand the effect of the SNN stimulation using different parameters on nerve cells. Thus, designing a real-time SNN could useful for the study of simulations of some part of the brain. Here, we present a different approach to optimize the Hodgkin-Huxley equations adapted for Field Programmable Gate Array (FPGA) implementation. The equations of the conductance have been unified to allow the use of same functions with different parameters for all ionic channels. The low resources and high-speed implementation also include features, such as synaptic noise using the Ornstein–Uhlenbeck process and different synapse receptors including AMPA, GABAa, GABAb, and NMDA receptors. The platform allows real-time modification of the neuron parameters and can output different cortical neuron families like Fast Spiking (FS), Regular Spiking (RS), Intrinsically Bursting (IB), and Low Threshold Spiking (LTS) neurons using a Digital to Analog Converter (DAC). Gaussian distribution of the synaptic noise highlights similarities with the biological noise. Also, cross-correlation between the implementation and the model shows strong correlations, and bifurcation analysis reproduces similar behavior compared to the original Hodgkin-Huxley model. The implementation of one core of calculation uses 3% of resources of the FPGA and computes in real-time 500 neurons with 25,000 synapses and synaptic noise which can be scaled up to 15,000 using all resources. This is the first step toward neuromorphic system which can be used for the simulation of bio-hybridization and for the study of neurological disorders or the advanced research on neuroprosthesis to regain lost function.

19 November 2022 in Brain Sciences
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Michela ChiappaloneMichela Chiappalone
Michela Chiappalone
Vinicius R. CotaVinicius R. Cota
Vinicius R. Cota
MCMarta Carè
Marta Carè
MFMattia Di Florio
Mattia Di Florio
RBRomain Beaubois
Romain Beaubois
TLTimothee Levi
Timothee Levi
Neuroprostheses are neuroengineering devices that have an interface with the nervous system and supplement or substitute functionality in people with disabilities. In the collective imagination, neuroprostheses are mostly used to restore sensory or motor capabilities, but in recent years, new devices directly acting at the brain level have been proposed. In order to design the next-generation of neuroprosthetic devices for brain repair, we foresee the increasing exploitation of closed-loop systems enabled with neuromorphic elements due to their intrinsic energy efficiency, their capability to perform real-time data processing, and of mimicking neurobiological computation for an improved synergy between the technological and biological counterparts. In this manuscript, after providing definitions of key concepts, we reviewed the first exploitation of a real-time hardware neuromorphic prosthesis to restore the bidirectional communication between two neuronal populations in vitro. Starting from that ‘case-study’, we provide perspectives on the technological improvements for real-time interfacing and processing of neural signals and their potential usage for novel in vitro and in vivo experimental designs. The development of innovative neuroprosthetics for translational purposes is also presented and discussed. In our understanding, the pursuit of neuromorphic-based closed-loop neuroprostheses may spur the development of novel powerful technologies, such as ‘brain-prostheses’, capable of rewiring and/or substituting the injured nervous system.

5 May 2020 in Scientific Reports
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YMYossi Mosbacher
Yossi Mosbacher
FKFarad Khoyratee
Farad Khoyratee
MGMiri Goldin
Miri Goldin
SKSivan Kanner
Sivan Kanner
YMYenehaetra Malakai
Yenehaetra Malakai
PBPaolo Bonifazi
Paolo Bonifazi
Restoration of the communication between brain circuitry is a crucial step in the recovery of brain damage induced by traumatic injuries or neurological insults. In this work we present a study of real-time unidirectional communication between a spiking neuronal network (SNN) implemented on digital platform and an in-vitro biological neuronal network (BNN), generating similar spontaneous patterns of activity both spatial and temporal. The communication between the networks was established using patterned optogenetic stimulation via a modified digital light projector (DLP) receiving real-time input dictated by the spiking neurons’ state. Each stimulation consisted of a binary image composed of 8 × 8 squares, representing the state of 64 excitatory neurons. The spontaneous and evoked activity of the biological neuronal network was recorded using a multi-electrode array in conjunction with calcium imaging. The image was projected in a sub-portion of the cultured network covered by a subset of the all electrodes. The unidirectional information transmission (SNN to BNN) is estimated using the similarity matrix of the input stimuli and output firing. Information transmission was studied in relation to the distribution of stimulus frequency and stimulus intensity, both regulated by the spontaneous dynamics of the SNN, and to the entrainment of the biological networks. We demonstrate that high information transfer from SNN to BNN is possible and identify a set of conditions under which such transfer can occur, namely when the spiking network synchronizations drive the biological synchronizations (entrainment) and in a linear regime response to the stimuli. This research provides further evidence of possible application of miniaturized SNN in future neuro-prosthetic devices for local replacement of injured micro-circuitries capable to communicate within larger brain networks.