Jan Egger

Dr. Jan Egger

1. Department of Oral & Maxillofacial Surgery, Medical University of Graz, Graz, Austria
+1
orcid

Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
21 January 2024 in Computer Methods and Programs in Biomedicine
Verified
Journal Article
Open access
JLJianning Li
Jianning Li
ADAmin Dada
Amin Dada
BPBehrus Puladi
Behrus Puladi
JKJens Kleesiek
Jens Kleesiek
JEJan Egger
Jan Egger
The recent release of ChatGPT, a chat bot research project/product of natural language processing (NLP) by OpenAI, stirs up a sensation among both the general public and medical professionals, amassing a phenomenally large user base in a short time. This is a typical example of the 'productization' of cutting-edge technologies, which allows the general public without a technical background to gain firsthand experience in artificial intelligence (AI), similar to the AI hype created by AlphaGo (DeepMind Technologies, UK) and self-driving cars (Google, Tesla, etc.). However, it is crucial, especially for healthcare researchers, to remain prudent amidst the hype. This work provides a systematic review of existing publications on the use of ChatGPT in healthcare, elucidating the 'status quo' of ChatGPT in medical applications, for general readers, healthcare professionals as well as NLP scientists. The large biomedical literature database PubMed is used to retrieve published works on this topic using the keyword 'ChatGPT'. An inclusion criterion and a taxonomy are further proposed to filter the search results and categorize the selected publications, respectively. It is found through the review that the current release of ChatGPT has achieved only moderate or 'passing' performance in a variety of tests, and is unreliable for actual clinical deployment, since it is not intended for clinical applications by design. We conclude that specialized NLP models trained on (bio)medical datasets still represent the right direction to pursue for critical clinical applications.

11 May 2022 in Computer Methods and Programs in Biomedicine
Verified
Journal Article
Open access
JEJan Egger
Jan Egger
CSChristina Schwarz-Gsaxner
Christina Schwarz-Gsaxner
APAntonio Pepe
Antonio Pepe
KPKelsey L. Pomykala
Kelsey L. Pomykala
FJFrederic Jonske
Frederic Jonske
JKJens Kleesiek
Jens Kleesiek
Deep learning has remarkably impacted several different scientific disciplines over the last few years. For example, in image processing and analysis, deep learning algorithms were able to outperform other cutting-edge methods. Additionally, deep learning has delivered state-of-the-art results in tasks like autonomous driving, outclassing previous attempts. There are even instances where deep learning outperformed humans, for example with object recognition and gaming. Deep learning is also showing vast potential in the medical domain. With the collection of large quantities of patient records and data, and a trend towards personalized treatments, there is a great need for automated and reliable processing and analysis of health information. Patient data is not only collected in clinical centers, like hospitals and private practices, but also by mobile healthcare apps or online websites. The abundance of collected patient data and the recent growth in the deep learning field has resulted in a large increase in research efforts. In Q2/2020, the search engine PubMed returned already over 11,000 results for the search term 'deep learning', and around 90% of these publications are from the last three years. However, even though PubMed represents the largest search engine in the medical field, it does not cover all medical-related publications. Hence, a complete overview of the field of 'medical deep learning' is almost impossible to obtain and acquiring a full overview of medical sub-fields is becoming increasingly more difficult. Nevertheless, several review and survey articles about medical deep learning have been published within the last few years. They focus, in general, on specific medical scenarios, like the analysis of medical images containing specific pathologies. With these surveys as a foundation, the aim of this article is to provide the first high-level, systematic meta-review of medical deep learning surveys.

6 January 2022 in Data in Brief
Verified
Journal Article
Open access
LRLukas Radl
Lukas Radl
YJYuan Jin
Yuan Jin
APAntonio Pepe
Antonio Pepe
JLJianning Li
Jianning Li
CSChristina Schwarz-Gsaxner
Christina Schwarz-Gsaxner
JEJan Egger
Jan Egger
In this article, we present a multicenter aortic vessel tree database collection, containing 56 aortas and their branches. The datasets have been acquired with computed tomography angiography (CTA) scans and each scan covers the ascending aorta, the aortic arch and its branches into the head/neck area, the thoracic aorta, the abdominal aorta and the lower abdominal aorta with the iliac arteries branching into the legs. For each scan, the collection provides a semi-automatically generated segmentation mask of the aortic vessel tree (ground truth). The scans come from three different collections and various hospitals, having various resolutions, which enables studying the geometry/shape variabilities of human aortas and its branches from different geographic locations. Furthermore, creating a robust statistical model of the shape of human aortic vessel trees, which can be used for various tasks such as the development of fully-automatic segmentation algorithms for new, unseen aortic vessel tree cases, e.g. by training deep learning-based approaches. Hence, the collection can serve as an evaluation set for automatic aortic vessel tree segmentation algorithms.

1 October 2020 in Medical Image Analysis
Verified
Journal Article
Closed access
APAntonio Pepe
Antonio Pepe
JLJianning Li
Jianning Li
MRMalte Rolf-Pissarczyk
Malte Rolf-Pissarczyk
CGChristina Gsaxner
Christina Gsaxner
XCXiaojun Chen
Xiaojun Chen
JEJan Egger
Jan Egger

21 March 2017 in PLOS ONE
Verified
Journal Article
Open access
PDF file
JEJan Egger
Jan Egger
MGMarkus Gall
Markus Gall
JWJürgen Wallner
Jürgen Wallner
PBPedro Boechat
Pedro Boechat
AHAlexander Hann
Alexander Hann
DSDieter Schmalstieg
Dieter Schmalstieg
Virtual Reality, an immersive technology that replicates an environment via computer-simulated reality, gets a lot of attention in the entertainment industry. However, VR has also great potential in other areas, like the medical domain, Examples are intervention planning, training and simulation. This is especially of use in medical operations, where an aesthetic outcome is important, like for facial surgeries. Alas, importing medical data into Virtual Reality devices is not necessarily trivial, in particular, when a direct connection to a proprietary application is desired. Moreover, most researcher do not build their medical applications from scratch, but rather leverage platforms like MeVisLab, MITK, OsiriX or 3D Slicer. These platforms have in common that they use libraries like ITK and VTK, and provide a convenient graphical interface. However, ITK and VTK do not support Virtual Reality directly. In this study, the usage of a Virtual Reality device for medical data under the MeVisLab platform is presented. The OpenVR library is integrated into the MeVisLab platform, allowing a direct and uncomplicated usage of the head mounted display HTC Vive inside the MeVisLab platform. Medical data coming from other MeVisLab modules can directly be connected per drag-and-drop to the Virtual Reality module, rendering the data inside the HTC Vive for immersive virtual reality inspection.

1 October 2021 in Medical Image Analysis
Verified
Journal Article
Closed access
JLJianning Li
Jianning Li
GCGord von Campe
Gord von Campe
APAntonio Pepe
Antonio Pepe
CGChristina Gsaxner
Christina Gsaxner
EWEnpeng Wang
Enpeng Wang
JEJan Egger
Jan Egger