Identifying fungi in microscopic leucorrhea images provides important information for evaluating gynecological diseases. Subjective judgment and fatigue can greatly affect recognition accuracy. This paper proposes an automatic identification system to detect fungi in leucorrhea images that incorporates a convolutional neural network, the histogram of oriented gradients algorithm, and a binary support vector machine. In experiments, the detection rate of the positive samples was as high as 99.8%. The experimental results demonstrate the effectiveness of the proposed method and its potential as a primary software component of a completely automated system.
1 January 2021 in Computational Intelligence and Neuroscience
The vestibular system is the sensory apparatus that helps the body maintain its postural equilibrium, and semicircular canal is an important organ of the vestibular system. The semicircular canals are three membranous tubes, each forming approximately two‐thirds of a circle with a diameter of approximately 6.5 mm, and segmenting them accurately is of great benefit for auxiliary diagnosis, surgery, and treatment of vestibular disease. However, the semicircular canal has small volume, which accounts for less than 1% of the overall computed tomography image. Doctors have to annotate the image in a slice‐by‐slice manner, which is time‐consuming and labor‐intensive. To solve this problem, we propose a novel 3D convolutional neural network based on 3D U‐Net to automatically segment the semicircular canal. We added the spatial attention mechanism of 3D spatial squeeze and excitation modules, as well as channel attention mechanism of 3D global attention upsample modules to improve the network performance. Our network achieved an average dice coefficient of 92.5% on the test dataset, which shows competitive performance in semicircular canals segmentation task.
Glaucoma is characterized by the progressive loss of retinal ganglion cells (RGCs), although the pathogenic mechanism remains largely unknown. To study the mechanism and assess RGC degradation, mouse models are often used to simulate human glaucoma and specific markers are used to label and quantify RGCs. However, manually counting RGCs is time-consuming and prone to distortion due to subjective bias. Furthermore, semi-automated counting methods can produce significant differences due to different parameters, thereby failing objective evaluation. Here, to improve counting accuracy and efficiency, we developed an automated algorithm based on the improved YOLOv5 model, which uses five channels instead of one, with a squeeze-and-excitation block added. The complete number of RGCs in an intact mouse retina was obtained by dividing the retina into small overlapping areas and counting, and then merging the divided areas using a non-maximum suppression algorithm. The automated quantification results showed very strong correlation (mean Pearson correlation coefficient of 0.993) with manual counting. Importantly, the model achieved an average precision of 0.981. Furthermore, the graphics processing unit (GPU) calculation time for each retina was less than 1 min. The developed software has been uploaded online as a free and convenient tool for studies using mouse models of glaucoma, which should help elucidate disease pathogenesis and potential therapeutics.
The microcharacter recognition on the distributed feedback (DFB) laser chip is critically essential but a challenging task for the quality control in the incoming chip inspection and optical device manufacturing lines. Hence, this article proposes, designs, and implements a micro-optical character recognition system based on the microscopic imaging system and deep convolutional neural network to facilitate the microcharacter recognition of DFB chips. The proposed micron optical character recognition (MOCR) contains four components, namely, a microscopic imaging system-based visual-based measurement (VBM), character detection, orientation correction, and character recognition. In particular, data augmentation methods considering limited datasets and some chip character features are studied so as to accommodate complex industrial environments and tiny DFB chips. Experiments from the DFB image dataset of a real optical device manufacturing line showed that it reached the accuracy of 98.8%, which took a high speed of over 12.8 fps coping with DFB chip images, and saved 72% of the labor in the inspection position compared to traditional methods. To the best of our knowledge, there are no existing reports focused on MOCR on DFB chips. So, the first realization and successful application of MOCR played a key role in the intelligent manufacturing and quality traceability of DFB chips and devices in the field of optical communications, which is also of great significance for further accelerating the development of the industrial Internet.
4 August 2021 in IEEE Journal of Biomedical and Health Informatics
Accompanied with the rapid increase of the demand for routine examination of leucorrhea, efficiency and accuracy become the primary task. However, in super depth of field (SDoF) system, the problem of automatic detection and localization of cells in leucorrhea micro-images is still a big challenge. The changing of the relative position between the cell center and focus plane of microscope lead to variable cell morphological structure in the two-dimensional image, which is an important reason for the low accuracy of current deep learning target detection algorithms. In this paper, an object detection method based on Retinanet in state of super depth of field is proposed, which can achieve high precision detecting of leucorrhea components by the SDoF feature aggregation module. Compared with the current mainstream algorithms, the mean average accuracy (mAP) index has been improved significantly, the mAP index is 82.7% for SDoF module and 83.0% for SDoF+ module, with an average increase of more than 10%. These improved features can significantly improve the efficiency and accuracy of the algorithm. The algorithm proposed in this paper can be integrated into the leucorrhea automatic detection system.