Chen Qiyi

Chen Qiyi


Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 October 2021 in Frontiers in Microbiology
Verified
Journal Article
Open access
XZXueying Zhang
Xueying Zhang
NLNing Li
Ning Li
CQChen Qiyi
Chen Qiyi
HQHuanlong Qin
Huanlong Qin
Intestinal dysmotility is common in many diseases and is correlated with gut microbiota dysbiosis and systemic inflammation. Functional constipation (FC) is the most typical manifestation of intestinal hypomotility and reduces patients’ quality of life. Some studies have reported that fecal micriobiota transplantation (FMT) may be an effective and safe therapy for FC as it corrects intestinal dysbiosis. This study was conducted to evaluate how FMT remodels the gut microbiome and to determine a possible correlation between certain microbes and clinical symptoms in constipated individuals. Data were retrospectively collected on 18 patients who underwent FMT between January 1, 2019 and June 30, 2020. The fecal bacterial genome was detected by sequencing the V3–V4 hypervariable regions of the 16S rDNA gene. Fecal short chain fatty acids (SCFAs) were detected by gas chromatography-mass spectrometry, and serum inflammatory factor concentrations were detected via enzyme-linked immunosorbent assay. Comparing the changes in fecal microbiome compositions before and after FMT revealed a significant augmentation in the alpha diversity and increased abundances of some flora such as Clostridiales, Fusicatenibacter, and Paraprevotella. This was consistent with the patients experiencing relief from their clinical symptoms. Abundances of other flora, including Lachnoanaerobaculum, were decreased, which might correlate with the severity of patients’ constipation. Although no differences were found in SCFA production, the butyric acid concentration was correlated with both bacterial alterations and clinical symptoms. Serum IL-8 levels were significantly lower after FMT than at baseline, but IL-4, IL-6, IL-10, and IL-12p70 levels were not noticeably changed. This study showed how FMT regulates the intestinal microenvironment and affects systemic inflammation in constipated patients, providing direction for further research on the mechanisms of FMT. It also revealed potential microbial targets for precise intervention, which may bring new breakthroughs in treating constipation.

19 July 2023 in Gut Microbes
Verified
Journal Article
Open access
HTHongliang Tian
Hongliang Tian
JCJiaqu Cui
Jiaqu Cui
CYChen Ye
Chen Ye
JZJiangman Zhao
Jiangman Zhao
BYBo Yang
Bo Yang
CQChen Qiyi
Chen Qiyi
Approximately 10% of individuals diagnosed with Clostridium difficile infection (CDI) show the resistance to fecal microbiota transplantation (FMT), with the underlying mechanisms remaining elusive. Deciphering the intricate microbiome profile within this particular subset of FMT-refractory patients via clinical FMT investigations assumes paramount importance, as it holds the key to designing targeted therapeutic interventions tailored for CDI, particularly recurrent CDI (rCDI). A cohort of twenty-three patients afflicted with rCDI, exhibiting congruent clinical baselines, was meticulously selected for FMT. Rigorous screening of thousands of healthy individuals identified ten FMT donors who met stringent health standards, while a total of 171 stool samples were collected to serve as healthy controls. To assess the influence of microbiome dynamics on FMT efficacy, fecal samples were collected from four donors over a continuous period of twenty-five weeks. After FMT treatment, seven individuals exhibited an inadequate response to FMT. These non-remission patients displayed a significant reduction in α-diversity indexes. Meanwhile, prior to FMT, the abundance of key butyrate-producing Firmicutes bacteria, including Christensenellaceae_R_7_group, Ruminococcaceae_unclassified, Coprococcus_2, Fusicatenibacter, Oscillospira, and Roseburia, were depleted in non-remission patients. Moreover, Burkholderiales_unclassified, Coprococcus_2, and Oscillospira failed to colonize non-remission patients both pre- and post-treatment. Conversely, patients with a favorable FMT response exhibited a higher relative abundance of Veillonella prior to treatment, whereas its depletion was commonly observed in non-remission individuals. Genera interactions in lower effectiveness FMT donors were more similar to those in non-remission patients, and Burkholderiales_unclassified, Coprococcus_2, and Oscillospira were frequently depleted in these lower effectiveness donors. Older patients were not conducive to the colonization of Veillonella, consistent with their poor prognosis after FMT. FMT non-remission rCDI patients exhibited distinct characteristics that hindered the colonization of beneficial butyrate-producing Firmicutes microbes. These findings hold promise in advancing the precision of FMT therapy for rCDI patients.

30 July 2021 in Frontiers in Medicine
Verified
Journal Article
Open access
JCJiaqu Cui
Jiaqu Cui
ZLZhiliang Lin
Zhiliang Lin
HTHongliang Tian
Hongliang Tian
BYBo Yang
Bo Yang
DZDi Zhao
Di Zhao
CQChen Qiyi
Chen Qiyi
Objective: This study aimed to investigate the long-term efficacy of fecal microbiota transplantation (FMT) in patients with irritable bowel syndrome (IBS).Study Methods: In this single-center long-term follow-up study, FMT treatment was administered to patients with moderate to severe IBS (IBS severity scoring system (IBS-SSS) > 175). After 1 year of treatment, it was decided whether to repeat FMT based on IBS-SSS score (IBS-SSS > 175). Baseline characteristics before and after FMT and questionnaires were completed at 1, 3, 6, 12, 24, 36, 48, and 60 months after FMT. The study outcomes included treatment efficacy rates, change of IBS-SSS, IBS-specific quality of life and fatigue, effect on stool frequency, Bristol Stool Scale for IBS-C and IBS-D, and side effects.Results: A total of 227 patients (47.58% IBS-C, 39.21% IBS-D, and 13.22% IBS-M) were recruited (142 females and 85 males with a mean age of 41.89 ± 13.57 years). The efficacy rates were 108 (51.92%), 147 (74.62%), 125 (74.41 %), 88 (71.54%), 78 (75.00%), 65 (73.03%), 45 (61.64%), and 37 (62.71%) at different follow-up time points. The total IBS-SSS score was 321.37 ± 73.89 before FMT, which significantly decreased after 1 month. The IBS-specific quality of life (IBS-QoL) score was 40.24 ± 11.34 before FMT, increased gradually, and was significantly higher at 3 months compared to before FMT. The total Fatigue Assessment Scale (FAS) score was 47 ± 8.64 before FMT and was significantly lower at 3 months. During follow-up, 89 (39.21%) side effects occurred that were alleviated by symptomatic treatment, and no serious adverse events were detected.Conclusion: Based on 60 months of long-term follow-up, the safety and efficacy of FMT for IBS was established. However, as the treatment effect declines over time, periodic and repetitive FMT is required for a sustained effect.

1 March 2022 in Gastroenterology
Verified
Journal Article
Open access
PDF file
SZShaoyi Zhang
Shaoyi Zhang
CQChen Qiyi
Chen Qiyi
CKColleen R. Kelly
Colleen R. Kelly
ZKZain Kassam
Zain Kassam
HQHuanlong Qin
Huanlong Qin
RYRong Yang
Rong Yang
  • I.
    Standard donor screening criteria
    • 1.
      Physiologic dimension, screening criteria evaluated as follows:
      • a.
        No clinically meaningful medical or surgical history;
      • b.
        Age 18–30 years old, BMI 18.5–23.9 kg/m2;
      • c.
        Hematologic examination: normal blood count, liver and renal function, electrolytes and C-reactive protein, and negative for hepatitis A, B, C, D, and E; HIV; syphilis; Epstein-Barr virus; herpes simplex virus types 1 and 2; cytomegalovirus; nematode, amoeba, and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2; aka COVID-19) IgM/IgG;
      • d.
        Feces examination: normal stool routine, negative for occult blood test, negative for C. difficile, Campylobacter, Salmonella, Shigella, Helicobacter pylori, enterotoxigenic E. coli and their eggs, vesicles, parasites, spores, norovirus, rotavirus, and other pathogens; negative for multidrug-resistance genes (carbapenem-resistant Enterobacteriaceae, extended-spectrum β-lactamase–producing bacteria, methicillin-resistant Staphylococcus aureus, and other drug-resistant bacteria;
      • e.
        Negative for monogenetic inherited disease;
      • f.
        Negative stool test for SARS-CoV-2 (COVID-19);
      • g.
        Negative nasal swab for SARS-CoV-2 (COVID-19) nucleic acid;
      • h.
        Negative nasal swab for methicillin-resistant S. aureus.
    • 2.
      Psychologically dimension, which evaluated the following:
      • a.
        Clinical assessment by psychiatrists or counselors to ensure donor candidate was in good psychological condition;
      • b.
        Self-rating depression scale, self-rating anxiety scale, Pittsburgh sleep quality index, and the psychological status of the donor candidate should be normal.
    • 3.
      Personal history evaluated
      • a.
        Previous medical history:
        • I.
          No gastrointestinal discomfort in the past 2 weeks;
        • II.
          No use of antibiotics, proton inhibitors, immunosuppressants, chemotherapy drugs, or other medications impacting that may impact the microbiome;
        • III.
          No chronic pain in the past 3 months;
        • IV.
          No history of gastrointestinal surgery;
        • V.
          No history of infectious diseases or risk of exposure to infectious diseases;
        • VI.
          No history of allergic diseases, autoimmune diseases;
        • VII.
          No chronic disease including metabolic diseases (eg, diabetes), cardiovascular diseases (eg, hypertension, stroke, and coronary heart disease), chronic respiratory diseases (eg, chronic bronchitis or chronic obstructive pulmonary disease);
        • VIII.
          No neurologic or psychiatric diseases;
        • IX.
          No history of malignant tumors;
        • X.
          No history of receiving growth hormone, insulin, coagulation factors and other intravenous injection;
      • b.
        Personal risk factors evaluated
        • I.
          Regular work and rest, healthy diet, family stressors;
        • II.
          Not a healthcare worker or animal care worker;
        • III.
          No high-risk sexual behavior;
        • IV.
          No smoking, drinking, or drug addiction;
        • V.
          No drug addiction;
        • VI.
          No vaccination or drug trial in the past 6 months;
        • VII.
          No tattoos or skin lesions;
        • VIII.
          No traveling to epidemic areas or tropical areas.
      • c.
        Family history evaluated
        • I.
          No family history of gastrointestinal diseases;
        • II.
          No family history of malignant tumors;
        • III.
          No family history of infectious diseases.
      • d.
        Others
        • I.
          Nonpregnancy;
        • II.
          Nonmenstrual period.
    • 4.
      The stability of donors is the consistent result of the clinical and laboratory examinations and microbiome sequencing.
      • a.
        The above items will be reexamined every 2 months and the outcomes can still meet the above criterions;
      • b.
        Each donated feces will be sampled for 16S rRNA sequencing to ensure the stable microbiome composition and diversity.
    • 5.
      Establish clinical records and follow-up system to ensure the persistence of the donor. Donors should ensure long-term fecal donation, at least twice a week, with at least 100 g each time.
    • 6.
      Donors’ tolerance to dietary restriction is accomplished through voluntary food restriction. Because some patients who receive FMT have food allergies and food intolerances (eg, eggs, milk, etc), food type restriction may be implemented for donors providing material for recipients with food allergies. Donors will eliminate food allergens 5 days before donation, and if the donor is intolerant, he or she cannot serve as a donor for recipients who have food allergens.
  • II.
    Quality control factors for routine qualified donors
    • 1.
      For donors who have provided material for FMT, a quality control model is used to ensure effectiveness. Specifically, using the donor–patient efficiency analyze model, a single donor’s overall effectiveness of ≥75% is considered a “super donor” based on retrospective statistical analysis on the effectiveness of 50 patients treated for each condition. Of note, initial donor candidate screening does not incorporate the quality control model, which is only applied for routine qualified donors.
    • 2.
      The threshold of the effectiveness is 60%, and the characteristics of the microbiome variety and metabolites between groups with therapeutic effectiveness ≥ or <60% are analyzed and are considered as exploratory indicators for subsequent donor screening strategy for each condition.
    • 3.
      The Chinese version of the Big Five personality trait model, which includes the 5 dimensions of extraversion, agreeableness, conscientiousness, neuroticism, and openness, is used to evaluate donors’ personality traits.
  • III.
    Donor management criteria
    • 1.
      A donor manager at the FMT center is responsible for the management of donors.
    • 2.
      Before starting the screening process, donor candidates should sign a written informed consent form and complete a questionnaire each time they donate feces to assess any changes in their health status. The collection of donors’ social and biologic information is both reviewed and approved by the ethical abroad of Ethics Committee of Tongji University, Shanghai.
    • 3.
      Donors complete clinical and laboratory every 8–12 weeks.
    • 4.
      Real-time monitoring mobile app systems are applied to follow-up on the donor. Donor managers communicate with donors via the "优菌客Youjunke" mobile app. The ""优菌客Youjunke" mobile phone app collects vital signs and daily behavioral records of the donors. Qualified donors walk at least 10,000 steps and consume at least 5 different fruits (provided in the form of fruit purchasing coupons).
    • 5.
      Donors are required to donate stool at least 2 times a week, with the amount ≥100 g (Bristol stool scale type 3–4) each time.

13 January 2025 in Science Bulletin
Verified
Journal Article
Open access
XWXinjun Wang
Xinjun Wang
DZDi Zhao
Di Zhao
DBDexi Bi
Dexi Bi
LLLong Li
Long Li
HTHongliang Tian
Hongliang Tian
HQHuanlong Qin
Huanlong Qin
With the popularization of modern lifestyles, the spectrum of intestinal diseases has become increasingly diverse, presenting significant challenges in its management. Traditional pharmaceutical interventions have struggled to keep pace with these changes, leaving many patients refractory to conventional pharmaceutical treatments. Fecal microbiota transplantation (FMT) has emerged as a promising therapeutic approach for enterogenic diseases. Still, controversies persist regarding its active constituents, mechanism of action, scheme of treatment evaluation, indications, and contraindications. In this review, we investigated the efficacy of FMT in addressing gastrointestinal and extraintestinal conditions, drawing from follow-up data on over 8000 patients. We systematically addressed the controversies surrounding FMT's clinical application. We delved into key issues such as its technical nature, evaluation methods, microbial restoration mechanisms, and impact on the host-microbiota interactions. Additionally, we explored the potential colonization patterns of FMT-engrafted new microbiota throughout the entire intestine and elucidated the specific pathways through which the new microbiota modulates host immunity, metabolism, and genome.

11 June 2025 in Journal of Translational Medicine
Verified
Journal Article
Open access
PDF file
BYBo Yang
Bo Yang
XLXinhui Li
Xinhui Li
JWJiahui Wang
Jiahui Wang
YXYue Xu
Yue Xu
LWLe Wang
Le Wang
ZLZhongchen Liu
Zhongchen Liu
Sarcopenia, a prevalent geriatric syndrome, is influenced by factors such as inflammation, immune deficiency, and oxidative stress. In elderly individuals, alterations in the microbiome, including reduced biodiversity and functional changes, significantly contribute to the progression of the disease. Targeting the gut-muscle axis has emerged as a promising therapeutic strategy to mitigate age-related muscle atrophy and dysfunction. This study employed fecal microbiota transplantation (FMT) to restore intestinal homeostasis in patients with sarcopenia. Muscle mass was measured using bioelectrical impedance analysis, while muscle function was assessed through grip strength and the five-time sit-to-stand test. Inflammatory markers, including tumor necrosis factor-α (TNF-α) and C-reactive protein (CRP), were also analyzed. Eighty-seven patients received resistance training (RT) treatment, while eighty-five patients received FMT combined with RT treatment, with a follow-up period of 24 weeks. After 24 weeks, the resistance training (RT) group showed a partial remission (PR) rate of 54.7% and a complete remission (CR) rate of 32.4%. The FMT plus RT group demonstrated a PR rate of 66.5% and a CR rate of 46.7%. Significant improvements induced by FMT treatment were observed in clinical markers of muscle mass, function, and inflammation. These results underscore the promise of microbial-based therapies, including fecal microbiota transplantation (FMT), as groundbreaking strategies for addressing sarcopenia. The research indicates that integrating FMT with resistance training could improve muscle mass and function while alleviating inflammation in sarcopenia patients, presenting a hopeful avenue for effective management of the condition