Dominik Paquet

Dr. Dominik Paquet

orcid

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 April 2016 in Nature
Verified
Journal Article
Closed access
DPDominik Paquet
Dominik Paquet
DKDylan Kwart
Dylan Kwart
ACAntonia Chen
Antonia Chen
ASAndrew Sproul
Andrew Sproul
SJSamson Jacob
Samson Jacob
MTMarc Tessier-Lavigne
Marc Tessier-Lavigne

7 November 2007 in Journal of Neuroscience
Verified
Journal Article
Open access
PDF file
NENicole Exner
Nicole Exner
BTBettina Treske
Bettina Treske
DPDominik Paquet
Dominik Paquet
KHKira Holmström
Kira Holmström
CSCarola Schiesling
Carola Schiesling
CHChristian Haass
Christian Haass
Degeneration of dopaminergic neurons in the substantia nigra is characteristic for Parkinson's disease (PD), the second most common neurodegenerative disorder. Mitochondrial dysfunction is believed to contribute to the etiology of PD. Although most cases are sporadic, recent evidence points to a number of genes involved in familial variants of PD. Among them, a loss-of-function of phosphatase and tensin homolog-induced kinase 1 (PINK1; PARK6) is associated with rare cases of autosomal recessive parkinsonism. In HeLa cells, RNA interference-mediated downregulation of PINK1 results in abnormal mitochondrial morphology and altered membrane potential. Morphological changes of mitochondria can be rescued by expression of wild-type PINK1 but not by PD-associated PINK1 mutants. Moreover, primary cells derived from patients with two different PINK1 mutants showed a similar defect in mitochondrial morphology. Human parkin but not PD-associated mutants could rescue mitochondrial pathology in human cells like wild-type PINK1. Our results may therefore suggest that PINK1 deficiency in humans results in mitochondrial abnormalities associated with cellular stress, a pathological phenotype, which can be ameliorated by enhanced expression of parkin.

1 May 2009 in Journal of Clinical Investigation
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Journal Article
Open access
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DPDominik Paquet
Dominik Paquet
RBRatan Bhat
Ratan Bhat
ASAstrid Sydow
Astrid Sydow
EMEva-Maria Mandelkow
Eva-Maria Mandelkow
SBStefan Berg
Stefan Berg
CHChristian Haass
Christian Haass
Our aging society is confronted with a dramatic increase of patients suffering from tauopathies, which include Alzheimer disease and certain frontotemporal dementias. These disorders are characterized by typical neuropathological lesions including hyperphosphorylation and subsequent aggregation of TAU protein and neuronal cell death. Currently, no mechanism-based cures are available. We generated fluorescently labeled TAU transgenic zebrafish, which rapidly recapitulated key pathological features of tauopathies, including phosphorylation and conformational changes of human TAU protein, tangle formation, neuronal and behavioral disturbances, and cell death. Due to their optical transparency and small size, zebrafish larvae are well suited for both in vivo imaging and drug development. TAU-induced neuronal cell death was imaged by time-lapse microscopy in vivo. Furthermore, we used this zebrafish model to identify compounds targeting the TAU kinase glycogen synthase kinase 3β (GSK3β). We identified a newly developed highly active GSK3β inhibitor, AR-534, by rational drug design. AR-534 reduced TAU phosphorylation in TAU transgenic zebrafish. This transgenic zebrafish model may become a valuable tool for further studies of the neuropathology of dementia.

1 May 2020 in Cell Reports
Verified
Journal Article
Open access
IWIsabel Weisheit
Isabel Weisheit
JKJoseph A. Kroeger
Joseph A. Kroeger
RMRainer Malik
Rainer Malik
JKJulien Klimmt
Julien Klimmt
DCDennis Crusius
Dennis Crusius
DPDominik Paquet
Dominik Paquet
CRISPR genome editing is a promising tool for translational research but can cause undesired editing outcomes, both on target at the edited locus and off target at other genomic loci. Here, we investigate the occurrence of deleterious on-target effects (OnTEs) in human stem cells after insertion of disease-related mutations by homology-directed repair (HDR) and gene editing using non-homologous end joining (NHEJ). We identify large, mono-allelic genomic deletions and loss-of-heterozygosity escaping standard quality controls in up to 40% of edited clones. To reliably detect such events, we describe simple, low-cost, and broadly applicable quantitative genotyping PCR (qgPCR) and single-nucleotide polymorphism (SNP) genotyping-based tools and suggest their usage as additional quality controls after editing. This will help to ensure the integrity of edited loci and increase the reliability of CRISPR editing.

13 March 2023 in Nature Biotechnology
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Journal Article
Closed access
PDF file
AGAdrian Gottschlich
Adrian Gottschlich
MTMoritz Thomas
Moritz Thomas
RGRuth Grünmeier
Ruth Grünmeier
SLStefanie Lesch
Stefanie Lesch
LRLisa Rohrbacher
Lisa Rohrbacher
SKSebastian Kobold
Sebastian Kobold

5 December 2019 in Nature Medicine
Verified
Journal Article
Closed access
PDF file
FLFabien G. Lafaille
Fabien G. Lafaille
OHOliver Harschnitz
Oliver Harschnitz
YLYoon Seung Lee
Yoon Seung Lee
PZPeng Zhang
Peng Zhang
MHMary L. Hasek
Mary L. Hasek
SZShen-Ying Zhang
Shen-Ying Zhang