Lars Pedersen

Dr. Lars Pedersen

orcid

Research Focus & Metrics

Academic Career Length

33Years (1994-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2001 in Archives of Biochemistry and Biophysics
Verified
Journal Article
Open access
MNMasahiko Negishi
Masahiko Negishi
LPLee G. Pedersen
Lee G. Pedersen
EPEvgeniy Petrotchenko
Evgeniy Petrotchenko
SSSergei Shevtsov
Sergei Shevtsov
AGAnna Gorokhov
Anna Gorokhov
LPLars Pedersen
Lars Pedersen
Sulfotransferases (STs) catalyze the transfer reaction of the sulfate group from the ubiquitous donor 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to an acceptor group of numerous substrates. This reaction, often referred to as sulfuryl transfer, sulfation, or sulfonation, is widely observed from bacteria to humans and plays a key role in various biological processes such as cell communication, growth and development, and defense. The cytosolic STs sulfate small molecules such as steroids, bioamines, and therapeutic drugs, while the Golgi-membrane counterparts sulfate large molecules including glucosaminylglycans and proteins. We have now solved the X-ray crystal structures of four cytosolic and one membrane ST. All five STs are globular proteins composed of a single alpha/beta domain with the characteristic five-stranded beta-sheet. The beta-sheet constitutes the core of the Paps-binding and catalytic sites. Structural analysis of the PAPS-, PAP-, substrate-, and/or orthovanadate (VO(3-)(4))-bound enzymes has also revealed the common molecular mechanism of the transfer reaction catalyzed by sulfotransferses. The X-ray crystal structures have opened a new era for the study of sulfotransferases.

19 July 1994 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Closed access
VYV C Yee
V C Yee
LPLars Pedersen
Lars Pedersen
ITI Le Trong
I Le Trong
PBP D Bishop
P D Bishop
RSR E Stenkamp
R E Stenkamp
DTD C Teller
D C Teller
Mechanical stability in many biological materials is provided by the crosslinking of large structural proteins with gamma-glutamyl-epsilon-lysyl amide bonds. The three-dimensional structure of human recombinant factor XIII (EC 2.3.2.13 zymogen; protein-glutamine:amine gamma-glutamyltransferase a chain), a transglutaminase zymogen, has been solved at 2.8-A resolution by x-ray crystallography. This structure shows that each chain of the homodimeric protein is folded into four sequential domains. A catalytic triad reminiscent of that observed in cysteine proteases has been identified in the core domain. The amino-terminal activation peptide of each subunit crosses the dimer interface and partially occludes the opening of the catalytic cavity in the second subunit, preventing substrate binding to the zymogen. A proposal for the mechanism of activation by thrombin and calcium is made that details the structural events leading to active factor XIIIa'.

1 April 2006 in Structure
Verified
Journal Article
Closed access
VBVinod K. Batra
Vinod K. Batra
WBWilliam A. Beard
William A. Beard
DSDavid D. Shock
David D. Shock
JKJoseph M. Krahn
Joseph M. Krahn
LPLars Pedersen
Lars Pedersen
SWSamuel H. Wilson
Samuel H. Wilson

1 November 1997 in Nature Structural & Molecular Biology
Verified
Journal Article
Closed access
YKYoshimitsu Kakuta
Yoshimitsu Kakuta
LPLee G. Pedersen
Lee G. Pedersen
CCCharles W. Carter
Charles W. Carter
MNMasahiko Negishi
Masahiko Negishi
LPLars Pedersen
Lars Pedersen

1 December 2007 in DNA Repair
Verified
Journal Article
Closed access
AMAndrea F. Moon
Andrea F. Moon
MGMiguel Garcia-Diaz
Miguel Garcia-Diaz
VBVinod K. Batra
Vinod K. Batra
WBWilliam A. Beard
William A. Beard
KBKatarzyna Bebenek
Katarzyna Bebenek
LPLars Pedersen
Lars Pedersen

1 March 2010 in Protein Science
Verified
Journal Article
Open access
PDF file
AMAndrea F. Moon
Andrea F. Moon
GMGeoffrey Mueller
Geoffrey Mueller
XZXuejun Zhong
Xuejun Zhong
LPLars Pedersen
Lars Pedersen
Protein crystallographers are often confronted with recalcitrant proteins not readily crystallizable, or which crystallize in problematic forms. A variety of techniques have been used to surmount such obstacles: crystallization using carrier proteins or antibody complexes, chemical modification, surface entropy reduction, proteolytic digestion, and additive screening. Here we present a synergistic approach for successful crystallization of proteins that do not form diffraction quality crystals using conventional methods. This approach combines favorable aspects of carrier‐driven crystallization with surface entropy reduction. We have generated a series of maltose binding protein (MBP) fusion constructs containing different surface mutations designed to reduce surface entropy and encourage crystal lattice formation. The MBP advantageously increases protein expression and solubility, and provides a streamlined purification protocol. Using this technique, we have successfully solved the structures of three unrelated proteins that were previously unattainable. This crystallization technique represents a valuable rescue strategy for protein structure solution when conventional methods fail.