Jun Shen

Prof. Jun Shen

orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 June 2020 in Cell
Verified
Journal Article
Closed access
KZKang Zhang
Kang Zhang
XLXiaohong Liu
Xiaohong Liu
JSJun Shen
Jun Shen
ZLZhihuan Li
Zhihuan Li
YSYe Sang
Ye Sang
GWGuangyu Wang
Guangyu Wang

11 March 2021 in IEEE/ACM Transactions on Computational Biology and Bioinformatics
Verified
Journal Article
Closed access
YSYing Song
Ying Song
SZShuangjia Zheng
Shuangjia Zheng
LLLiang Li
Liang Li
XZXiang Zhang
Xiang Zhang
XZXiaodong Zhang
Xiaodong Zhang
YYYuedong Yang
Yuedong Yang
A novel coronavirus (COVID-19) recently emerged as an acute respiratory syndrome, and has caused a pneumonia outbreak world-widely. As the COVID-19 continues to spread rapidly across the world, computed tomography (CT) has become essentially important for fast diagnoses. Thus, it is urgent to develop an accurate computer-aided method to assist clinicians to identify COVID-19-infected patients by CT images. Here, we have collected chest CT scans of 88 patients diagnosed with COVID-19 from hospitals of two provinces in China, 100 patients infected with bacteria pneumonia, and 86 healthy persons for comparison and modeling. Based on the data, a deep learning-based CT diagnosis system was developed to identify patients with COVID-19. The experimental results showed that our model could accurately discriminate the COVID-19 patients from the bacteria pneumonia patients with an AUC of 0.95, recall (sensitivity) of 0.96, and precision of 0.79. When integrating three types of CT images, our model achieved a recall of 0.93 with precision of 0.86 for discriminating COVID-19 patients from others. Moreover, our model could extract main lesion features, especially the ground-glass opacity (GGO), which are visually helpful for assisted diagnoses by doctors. An online server is available for online diagnoses with CT images by our server ( http://biomed.nscc-gz.cn/model.php ). Source codes and datasets are available at our GitHub ( https://github.com/SY575/COVID19-CT ).

11 December 2018 in Angewandte Chemie International Edition
Verified
Journal Article
Closed access
PDF file
GCGuosheng Chen
Guosheng Chen
SHSiming Huang
Siming Huang
XKXiaoxue Kou
Xiaoxue Kou
SWSongbo Wei
Songbo Wei
SHShuyao Huang
Shuyao Huang
GOGangfeng Ouyang
Gangfeng Ouyang

1 July 2023 in Radiology
Verified
Journal Article
Closed access
ZSZhenwei Shi
Zhenwei Shi
XHXiaomei Huang
Xiaomei Huang
ZCZiliang Cheng
Ziliang Cheng
ZXZeyan Xu
Zeyan Xu
HLHuan Lin
Huan Lin
ZLZaiyi Liu
Zaiyi Liu
Background Breast cancer is highly heterogeneous, resulting in different treatment responses to neoadjuvant chemotherapy (NAC) among patients. A noninvasive quantitative measure of intratumoral heterogeneity (ITH) may be valuable for predicting treatment response. Purpose To develop a quantitative measure of ITH on pretreatment MRI scans and test its performance for predicting pathologic complete response (pCR) after NAC in patients with breast cancer. Materials and Methods Pretreatment MRI scans were retrospectively acquired in patients with breast cancer who received NAC followed by surgery at multiple centers from January 2000 to September 2020. Conventional radiomics (hereafter, C-radiomics) and intratumoral ecological diversity features were extracted from the MRI scans, and output probabilities of imaging-based decision tree models were used to generate a C-radiomics score and ITH index. Multivariable logistic regression analysis was used to identify variables associated with pCR, and significant variables, including clinicopathologic variables, C-radiomics score, and ITH index, were combined into a predictive model for which performance was assessed using the area under the receiver operating characteristic curve (AUC). Results The training data set was comprised of 335 patients (median age, 48 years [IQR, 42-54 years]) from centers A and B, and 590, 280, and 384 patients (median age, 48 years [IQR, 41-55 years]) were included in the three external test data sets. Molecular subtype (odds ratio [OR] range, 4.76-8.39 [95% CI: 1.79, 24.21]; all P < .01), ITH index (OR, 30.05 [95% CI: 8.43, 122.64]; P < .001), and C-radiomics score (OR, 29.90 [95% CI: 12.04, 81.70]; P < .001) were independently associated with the odds of achieving pCR. The combined model showed good performance for predicting pCR to NAC in the training data set (AUC, 0.90) and external test data sets (AUC range, 0.83-0.87). Conclusion A model that combined an index created from pretreatment MRI-based imaging features quantitating ITH, C-radiomics score, and clinicopathologic variables showed good performance for predicting pCR to NAC in patients with breast cancer. © RSNA, 2023 Supplemental material is available for this article. See also the editorial by Rauch in this issue.

25 February 2019 in Advanced Functional Materials
Verified
Journal Article
Closed access
PDF file
DWDan Wu
Dan Wu
XDXiaohui Duan
Xiaohui Duan
QGQingqing Guan
Qingqing Guan
JLJie Liu
Jie Liu
XYXi Yang
Xi Yang
ZCZhong Cao
Zhong Cao

16 October 2018 in Nature Communications
Verified
Journal Article
Open access
PDF file
HLHuiyi Liang
Huiyi Liang
BPBo Peng
Bo Peng
CDCong Dong
Cong Dong
LLLi-Xin Liu
Li-Xin Liu
JMJiaji Mao
Jiaji Mao
YCYongming Chen
Yongming Chen
Cell-free DNA (cfDNA) released from damaged or dead cells can activate DNA sensors that exacerbate the pathogenesis of rheumatoid arthritis (RA). Here we show that ~40 nm cationic nanoparticles (cNP) can scavenge cfDNA derived from RA patients and inhibit the activation of primary synovial fluid monocytes and fibroblast-like synoviocytes. Using clinical scoring, micro-CT images, MRI, and histology, we show that intravenous injection of cNP into a CpG-induced mouse model or collagen-induced arthritis rat model can relieve RA symptoms including ankle and tissue swelling, and bone and cartilage damage. This culminates in the manifestation of partial mobility recovery of the treated rats in a rotational cage test. Mechanistic studies on intracellular trafficking and biodistribution of cNP, as well as measurement of cytokine expression in the joints and cfDNA levels in systemic circulation and inflamed joints also correlate with therapeutic outcomes. This work suggests a new direction of nanomedicine in treating inflammatory diseases.