Lee Jen Nie

Dr. Lee Jen Nie

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 February 2026 in Nature Communications
Verified
Journal Article
Open access
CEC. Mark Eakin
C. Mark Eakin
SHScott Heron
Scott Heron
SCSean Connolly
Sean Connolly
DDDenise A. Devotta
Denise A. Devotta
GLGang Liu
Gang Liu
DMDerek Manzello
Derek Manzello
Ocean warming is increasing the frequency, extent, and severity of tropical-coral bleaching and mortality. During 2014–2017, marine heatwaves caused the Third Global Coral Bleaching Event. We analyze data from 15,066 reef surveys globally during 2014–2017. Across all surveyed reefs, 80% and 35% experienced moderate or greater (affecting >10% of corals) bleaching and mortality, respectively. We assess the global extent of coral bleaching and mortality by applying bleaching response curves calibrated from surveyed reefs to predict bleaching globally, based on comprehensive remote-sensing of heat stress. These models predict that 51% and 15% of the world’s coral reefs suffered moderate or greater bleaching and mortality, respectively, during one or multiple years, surpassing damage from any prior global coral bleaching event. Our findings demonstrate that the impacts of ocean warming on coral reefs are accelerating, with the near certainty that ongoing warming will cause large-scale, possibly irreversible, degradation of these essential ecosystems. With heat stress levels during this event surpassing those observed previously, the National Oceanic and Atmospheric Administration developed more extreme Bleaching Alert levels that are now being used during the ongoing Fourth Global Coral Bleaching Event.

15 September 2019 in Ecology and Evolution
Verified
Journal Article
Open access
PDF file
BWBenjamin J. Wainwright
Benjamin J. Wainwright
GZGeoffrey L. Zahn
Geoffrey L. Zahn
JZJoshua Zushi
Joshua Zushi
NLNicole Li Ying Lee
Nicole Li Ying Lee
JOJillian Lean Sim Ooi
Jillian Lean Sim Ooi
DHDanwei Huang
Danwei Huang
Marine fungal biodiversity remains vastly understudied, and even less is known of their biogeography and the processes responsible for driving these distributions in marine environments. We investigated the fungal communities associated with the seagrass Enhalus acoroides collected from Singapore and Peninsular Malaysia to test the hypothesis that fungal communities are homogeneous throughout the study area. Seagrass samples were separated into different structures (leaves, roots, and rhizomes), and a sediment sample was collected next to each plant. Amplicon sequencing of the fungal internal transcribed spacer 1 and subsequent analysis revealed significant differences in fungal communities collected from different locations and different structures. We show a significant pattern of distance decay, with samples collected close to each other having more similar fungal communities in comparison with those that are more distant, indicating dispersal limitations and/or differences in habitat type are contributing to the observed biogeographic patterns. These results add to our understanding of the seagrass ecosystem in an understudied region of the world that is also the global epicenter of seagrass diversity. This work has implications for seagrass management and conservation initiatives, and we recommend that fungal community composition be a consideration for any seagrass transplant or restoration programme.

21 January 2022 in Earth and Planetary Science Letters
Verified
Journal Article
Closed access
YHYu-Te Hsieh
Yu-Te Hsieh
RPRobert Paver
Robert Paver
JTJani T.I. Tanzil
Jani T.I. Tanzil
LBLuke Bridgestock
Luke Bridgestock
LNLee Jen Nie
Lee Jen Nie
GHGideon M. Henderson
Gideon M. Henderson

30 January 2023 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Open access
MCMengli Chen
Mengli Chen
GCGonzalo Carrasco
Gonzalo Carrasco
NZNing Zhao
Ning Zhao
XWXianfeng Wang
Xianfeng Wang
LNLee Jen Nie
Lee Jen Nie
EBEdward A. Boyle
Edward A. Boyle
Material fluxes at the land–ocean interface impact seawater composition and global cycling of elements. However, most attention has been focused on the fluvial dissolved fluxes. For elements like lead (Pb), whose fluvial particulate flux into the ocean is two orders of magnitude higher than the dissolved counterpart, the role of particulates in elemental cycling is potentially important but currently less appreciated. Using both chemical analyses on samples collected from around equatorial Southeast Asia and model simulations, we show that particulate-dissolved exchange is an important mechanism controlling the concentration and isotopic composition of dissolved Pb in the ocean. Our model indicates that Pb contributed from particulate-dissolved exchange at ocean boundaries is larger than, or at least comparable to, other major Pb sources to the seawater before the Anthropocene, when the anthropogenic Pb was absent. Our work highlights the importance of boundary exchange in understanding marine element cycling and weathering-climate feedback.

28 May 2020 in Coral Reefs
Verified
Journal Article
Open access
PDF file
NKNikita Kaushal
Nikita Kaushal
LYLiudongqing Yang
Liudongqing Yang
JTJani T. I. Tanzil
Jani T. I. Tanzil
LNLee Jen Nie
Lee Jen Nie
NGNathalie F. Goodkin
Nathalie F. Goodkin
PMPatrick Martin
Patrick Martin
Some massive coral core slices reveal luminescent bands under ultraviolet light, which have been attributed to terrestrial humic acids in the skeleton. Coral luminescence has therefore been used to reconstruct past climate and hydrological variability. However, it has remained unresolved how closely coral luminescence at sub-annual resolution is related to terrestrial humic acid concentrations. This study presents a solution-based fluorescence method to quantify terrestrial humic substances in less than 4 mg of coral powder. The results show that in corals from Malaysia and Singapore, the luminescence green-to-blue ratio is correlated with skeletal concentrations of terrestrial humic substances (R2 > 0.40, p < 0.001) at two sites that are exposed to terrestrial dissolved organic matter from peatlands on Sumatra. In contrast, coral cores from two other sites located far from major terrestrial organic matter sources show lower green-to-blue values and no convincing correlation with fluorescence intensity of terrestrial humic substances in the skeleton. Abiogenic aragonite precipitation experiments with both terrestrial and marine organic matter sources confirmed that terrestrial humic substances are readily incorporated into aragonite, but not fluorescent organic matter from marine sources. The results of this study suggest that in coral cores with high luminescence green-to-blue ratios (> 0.6) and large downcore variability (range of ≥ 0.05), the green-to-blue ratio is strongly linked to variation in terrestrial humic substances. Coral cores therefore have the potential to reconstruct past variation in terrigenous dissolved organic carbon fluxes.

26 August 2021 in Environmental Microbiology Reports
Verified
Journal Article
Open access
PDF file
ZQZ. B. Randolph Quek
Z. B. Randolph Quek
GZGeoffrey Zahn
Geoffrey Zahn
NLNicole Li Ying Lee
Nicole Li Ying Lee
JOJillian Lean Sim Ooi
Jillian Lean Sim Ooi
LNLee Jen Nie
Lee Jen Nie
BWBen Wainwright
Ben Wainwright
Summary: Distributed across both the tropical Atlantic and Pacific oceans, the seagrass Halophilia ovalis stabilizes coastal sediment, thereby preventing shoreline erosion and is also an important food source for megaherbivores such as dugongs. However, seagrass meadows globally are under severe duress due to both climate change and anthropogenic activities. We characterized the mycobiome of Halophilia ovalis at seven sites in the Malay Peninsula using ITS1 rDNA amplicon sequences and investigated differences in fungal community structure. We found that geographic location was a significant factor shaping fungal communities and that marine sediment harboured significantly higher diversity when compared to H. ovalis leaves, roots and rhizomes. Taken together, it is likely that locality rather than specific plant structure determines fungal community structure in H. ovalis . Because the plant mycobiome is known to exert a strong effect on plant health, to maximize the success of future seagrass transplantation and restoration work we propose that these efforts consider the importance of seagrass mycobiomes at all stages.