Ken Matsumoto

Dr. Ken Matsumoto

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Research Focus & Metrics

Academic Career Length

38Years (1989-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 November 2015 in Scientific Reports
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NANaoko Abe
Naoko Abe
KMKen Matsumoto
Ken Matsumoto
MNMizuki Nishihara
Mizuki Nishihara
YNYukiko Nakano
Yukiko Nakano
ASAya Shibata
Aya Shibata
HAHiroshi Abe
Hiroshi Abe
We recently reported that circular RNA is efficiently translated by a rolling circle amplification (RCA) mechanism in a cell-free Escherichia coli translation system. Recent studies have shown that circular RNAs composed of exonic sequences are abundant in human cells. However, whether these circular RNAs can be translated into proteins within cells remains unclear. In this study, we prepared circular RNAs with an infinite open reading frame and tested their translation in eukaryotic systems. Circular RNAs were translated into long proteins in rabbit reticulocyte lysate in the absence of any particular element for internal ribosome entry, a poly-A tail, or a cap structure. The translation systems in eukaryote can accept much simpler RNA as a template for protein synthesis by cyclisation. Here, we demonstrated that the circular RNA is efficiently translated in living human cells to produce abundant protein product by RCA mechanism. These findings suggest that translation of exonic circular RNAs present in human cells is more probable than previously thought.

1 August 1998 in Trends in Cell Biology
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KMKen Matsumoto
Ken Matsumoto
AWAlan P Wolffe
Alan P Wolffe

27 September 2001 in FEBS Letters
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OMOkuwaki Mitsuru
Okuwaki Mitsuru
KMKen Matsumoto
Ken Matsumoto
MTMasafumi Tsujimoto
Masafumi Tsujimoto
KNKyosuke Nagata
Kyosuke Nagata

19 May 2008 in Journal of Cell Biology
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Journal Article
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HKHironori Kawahara
Hironori Kawahara
TITakao Imai
Takao Imai
HIHiroaki Imataka
Hiroaki Imataka
MTMasafumi Tsujimoto
Masafumi Tsujimoto
KMKen Matsumoto
Ken Matsumoto
Hideyuki OkanoHideyuki Okano
Hideyuki Okano
Musashi1 (Msi1) is an RNA-binding protein that is highly expressed in neural stem cells. We previously reported that Msi1 contributes to the maintenance of the immature state and self-renewal activity of neural stem cells through translational repression of m-Numb. However, its translation repression mechanism has remained unclear. Here, we identify poly(A) binding protein (PABP) as an Msi1-binding protein, and find Msi1 competes with eIF4G for PABP binding. This competition inhibits translation initiation of Msi1's target mRNA. Indeed, deletion of the PABP-interacting domain in Msi1 abolishes its function. We demonstrate that Msi1 inhibits the assembly of the 80S, but not the 48S, ribosome complex. Consistent with these conclusions, Msi1 colocalizes with PABP and is recruited into stress granules, which contain the stalled preinitiation complex. However, Msi1 with mutations in two RNA recognition motifs fails to accumulate into stress granules. These results provide insight into the mechanism by which sequence-specific translational repression occurs in stem cells through the control of translation initiation.

1 April 1998 in The EMBO Journal
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Journal Article
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KMKen Matsumoto
Ken Matsumoto
KWKaren Montzka Wassarman
Karen Montzka Wassarman
AWAlan P. Wolffe
Alan P. Wolffe
The pathways of synthesis and maturation of pre‐messenger RNA in the nucleus have a direct effect on the translational efficiency of mRNA in the cytoplasm. The transcription of intron‐less mRNA in vivo directs this mRNA towards translational silencing. The presence of an intron at the 5′ end of the transcript relieves this silencing, whereas an intron at the 3′ end further represses translation. These regulatory events are strongly dependent on the transcription of pre‐mRNA in the nucleus. The impact of nuclear history on regulatory events in the cytoplasm provides a novel mechanism for the control of gene expression.

9 May 1995 in Proceedings of the National Academy of Sciences
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KNK Nagata
K Nagata
HKH Kawase
H Kawase
HHH Handa
H Handa
KYK Yano
K Yano
MYM Yamasaki
M Yamasaki
KMKen Matsumoto
Ken Matsumoto
DNA replication of the adenovirus genome complexed with viral core proteins is dependent on the host factor designated template activating factor I (TAF-I) in addition to factors required for replication of the naked genome. Recently, we have purified TAF-I as 39- and 41-kDa polypeptides from HeLa cells. Here we describe the cloning of two human cDNAs encoding TAF-I. Nucleotide sequence analysis revealed that the 39-kDa polypeptide corresponds to the protein encoded by the set gene, which is the part of the putative oncogene associated with acute undifferentiated leukemia when translocated to the can gene. The 41-kDa protein contains the same amino acid sequence as the 39-kDa protein except that short N-terminal regions differ in both proteins. Recombinant proteins, which were purified from extracts of Escherichia coli, expressing the proteins from cloned cDNAs, possessed TAF-I activities in the in vitro replication assay. A particular feature of TAF-I proteins is the presence of a long acidic tail in the C-terminal region, which is thought to be an essential part of the SET-CAN fusion protein. Studies with mutant TAF-I proteins devoid of this acidic region indicated that the acidic region is essential for TAF-I activity.