Escherichia coli is the most common bacterial cause of infections in poultry farms. It is known for its genetic heterogenicity that complicates the protection of poultry health through immunoprophylaxis. In farms with continuous problems with colibacillosis, autogenous E. coli vaccine was implemented to the vaccination program instead of commercial vaccines. In this study, we investigated the effect of the autogenous vaccine on E. coli phylogroup diversity on 2 broiler breeder farms with 4 and 5 flocks, respectively. The first flocks on both farms were vaccinated with commercial vaccines, while application of autogenous vaccine was introduced in the second flock on both farms. In total, 113 strains were selected based on the target organs and age of chickens. Targeted organs were the peritoneum, liver, oviduct, and bone marrow, and analyzed strains were isolated from chickens older than 21 wk of age when problems with colibacillosis start emerging. The strains were phylotyped by PCR and allocated to phylogroups A, B1, B2, C, D, E, F or clades I-V. The results showed that autogenous vaccine could significantly affect the phylogroup shift of the strains. On farm A, application of the autogenous vaccine induced significantly lower prevalence (P = 0.01) of the phylogroups represented in the vaccine among the strains later isolated from the vaccinated flock, while on farm B, the results showed a decrease in the phylogenetic diversity with a dominant prevalence of group B2 despite the vaccine application. The results indicate that implementation of the autogenous vaccine can repress the majority of the strains, but also be unable to eliminate the presence of certain phylogroups, and thus lead to strain shift. Further detailed analyses of multilocus sequence typing and virulence genes will elucidate the pathogenic potential and selection of certain strains, with emphasis on B2 phylogroup.

Escherichia coli (E. coli) is one of the most common bacterial causes of infection in poultry farming. Whether the infection is localized or systemic, a primary or secondary disease, it is most frequently treated through the application of wide-spectrum antimicrobials. Excessive use of antimicrobials in agriculture is significantly contributing to the worldwide rise of antimicrobial resistance, but is also very expensive and often ineffective in the long term. Here, we present a case where a colibacillosis outbreak on a family farm of laying hens was treated using an autogenous vaccine. The birds had septicemia, cellulitis, and severe skin wounds. They were not vaccinated against E. coli, and did not receive any antimicrobials previously. E. coli strains were isolated from the daily mortalities on the farm and used for preparation of the vaccine. Each bird was given an intramuscular injection of the autogenous vaccine. The immunogenicity of the vaccine was tested by the determination of specific antibody levels in the sera of the birds using the in-house ELISA. Shortly after vaccination, the morbidity and mortality rates significantly decreased, and egg production was improved. The application of the autogenous vaccine served as a curative and preventive measure, and has proven to be a very efficient method of antimicrobial therapy.

Escherichia coli is the main bacterial cause of major economic losses and animal welfare issues in poultry production. In this study, we investigate the effect of an autogenous vaccine on E. coli strains longitudinally isolated from broiler breeder flocks on two farms. In total, 115 E. coli isolates were sequenced using Illumina technologies, and compared based on a single-nucleotide polymorphism (SNP) analysis of the core-genome and antimicrobial resistance (AMR) genes they carried. The results showed that SNP-based phylogeny corresponds to a previous multilocus-sequence typing (MLST)-based phylogeny. Highly virulent sequence types (STs), including ST117-F, ST95-B2, ST131-B2 and ST390-B2, showed a higher level of homogeneity. On the other hand, less frequent STs, such as ST1485, ST3232, ST7013 and ST8573, were phylogenetically more distant and carried a higher number of antimicrobial resistance genes in most cases. In total, 25 antimicrobial genes were detected, of which the most prevalent were mdf(A) (100%), sitABCD (71.3%) and tet(A) (13.91%). The frequency of AMR genes showed a decreasing trend over time in both farms. The highest prevalence was detected in strains belonging to the B1 phylogenetic group, confirming the previous notion that commensal strains act as reservoirs and carry more resistance genes than pathogenic strains that are mostly associated with virulence genes.

The black soldier fly (Hermetia illucens) has emerged as an interesting alternative protein source in animal feed due to its ability to grow on various substrates. Although it has many rearing benefits and possible applications, it has an unfavourable fatty acid profile if used for human consumption due to its high content of lauric acid and low content of polyunsaturated fatty acids. In order to investigate whether the lipid composition of black soldier fly larvae can be altered, the feeding media were supplemented with varying concentrations of fish, linseed or coconut oil (1, 2.5 and 5%). Two-week-old larvae were collected, measured and their tissue fatty acid composition was determined. The fatty acid profile of the larvae showed significant plasticity, depending on the life stage and the fatty acid composition of the feeding media. The addition of 2.5 and 5% of different oils significantly changed the fatty acid composition of larvae, depending on the type and percentage of oil. The n6/n3 ratio was considerably improved by supplementing fish and linseed oil. The addition of linseed oil increased the content of linolenic acid, but bioconversion to eicosapentaenoic and docosahexaenoic acids was low. In contrast, the addition of fish oil significantly increased the content of eicosapentaenoic and docosahexaenoic acids in the larvae. The content of lauric acid significantly increased after coconut addition. The trial showed that by using different oils, the lipid composition of black soldier fly larvae could be specifically changed to increase the beneficial long chain n3 polyunsaturated fatty acids, and the amount of lauric or linolenic acid.

Fowl typhoid is a septicemic disease caused by Salmonella enterica subsp. enterica serovar Gallinarum biovar Gallinarum. It is a host-specific disease primarily affecting chickens and turkeys, although it has been reported in various animal species and sporadically in humans. Here, we present a case of a fowl typhoid outbreak on a turkey poult farm where the source of infection was the hatchery. The birds started showing symptoms of growth retardation at 21 days of age, after which the mortality rates gradually started to increase. Post mortem examination revealed that the main lesions were granulomatous proliferations in the small intestines. The results of the histopathological examination indicate that the severity of the infection was alleviated by the application of phytogenic mixtures and probiotics as a supportive treatment, even though the affected flock was eventually culled at 60 days of age. The farmer was advised to apply more strict biosecurity measures to prevent the spread of the disease on the farm and try to eradicate the pathogen from the barn. Since the outbreak, there have been no recurrent infections.