The Program for Biodiversity Research (PPBio) is an innovative program designed to integrate all biodiversity research stakeholders. Operating since 2004, it has installed long-term ecological research sites throughout Brazil and its logic has been applied in some other southern-hemisphere countries. The program supports all aspects of research necessary to understand biodiversity and the processes that affect it. There are presently 161 sampling sites (see some of them at Supplementary Appendix), most of which use a standardized methodology that allows comparisons across biomes and through time. To date, there are about 1200 publications associated with PPBio that cover topics ranging from natural history to genetics and species distributions. Most of the field data and metadata are available through PPBio web sites or DataONE. Metadata is available for researchers that intend to explore the different faces of Brazilian biodiversity spatio-temporal variation, as well as for managers intending to improve conservation strategies. The Program also fostered, directly and indirectly, local technical capacity building, and supported the training of hundreds of undergraduate and graduate students. The main challenge is maintaining the long-term funding necessary to understand biodiversity patterns and processes under pressure from global environmental changes.

Changes in physiognomy, species composition and structure, and dispersal mechanisms of canopy and subcanopy plant assemblages were investigated along a chronosequence of three ages: 12, 20, and 50+ years old (=old-growth), three replications in each, in an Atlantic Forest landscape in Northeastern Brazil. Our objective was to investigate whether there is floristic and structural convergence along secondary succession. There were significant differences between secondary and old-growth forests in density and basal area only for the subcanopy. Differences in density between forest ages were noted when the assemblage was analyzed per diameter and height classes. Richness of canopy species of both secondary ages differed from those of old-growth forests. Some dominant species in the canopy of secondary forests showed a significant decrease in density with increasing age, which indicates an ongoing process of floristic changes. The low level of shared species between secondary and old-growth forests supports the idea that species composition is one of the last components to recover during successional process. Zoochory was the most important dispersal guild in species percentage and number, irrespective of stand age. Although regenerating areas can take alternative pathways, our results indicate that secondary Atlantic Forest sites have a high potential for natural regeneration. This recovery is recorded as a physiognomic convergence of the canopy layer in as little as 12 years, and progressive introductions of later successional species into the plant assemblage that lead to convergence in terms of the diversity and richness of the subcanopy and of dispersal guilds just 20 years after abandonment.

Like edge effects, variations in topography can influence the physiognomy and structural patterns of the vegetation due to the high dynamics encountered in inclined areas. We evaluated the effect of edges on the structure and physiognomy of the arboreal and woody understory communities in patches of an Atlantic Forest remnant in two distinct topographic positions. Four study situations were laid out (slope edge, top edge, slope interior, and top interior), with ten 10 × 10 m plots each to sample the arboreal components (circumference at breast height ≥15 cm), and ten 5 × 5 m plots (in the corner of each arboreal component plot) to sample the woody understory (circumference at ground level ≥3 cm and with circumference at breast height <15 cm). We investigated physiognomic and structural variables of edge and interior environments in similar topographic positions on both slope and top (level) areas of the same remnant forest. Physiognomic and structural differences between edge and interior vegetation were noted, and these were found to be still more evident when different topographic positions were considered. Physiognomic and structural variations between the edge and interior vegetation were more notable on slopes than on hill tops, indicating greater dynamics in areas with greater topographic inclinations.

Synthesising knowledge on carbon stocks is an essential tool for understanding the potential of forests to store carbon and its drivers. However, such a synthesis needs to be constructed for the Atlantic Forest due to various methodological approaches and biogeographic heterogeneity. Thus, here we conducted a bibliographic search (2000 to 2021) on carbon stocks in the biomass and necromass of Atlantic Forest ecosystems to understand the variation in stocks and their explanatory variables. Drivers included spatial (altitude, forest size) and climatic (precipitation and temperature) variables, and successional stages. Based on the information in 46 articles, biomass exhibited the highest carbon stock (96%), in Mature Forests (MF), with an average of 125.34±40.3 MgC.ha^-1, whereas Secondary Forests (SF) stored 82.7±38.2 MgC.ha^-1. The carbon in the necromass varied from 1.63 to 11.47 MgC.ha^-1, with SF exhibiting 3.90±2.73 MgC.ha^-1 and MF 4.31±2.82 MgC.ha^-1. Only average annual precipitation and successional stage positively explained the carbon in Atlantic Forest. This research clarifies the function and potential of Atlantic Forest fragments for storing carbon and reinforces need for conserving mature forest patches throughout the biome since one hectare of mature forest can store almost twice as much carbon as one hectare of secondary young patches.

The woody plants in an edge area formed approximately 35 years ago in an Atlantic Forest fragment in northeastern Brazil were examined, and three environments defined: edge, intermediate, and interior. Canopy tree densities and basal areas were found to be similar in all three environments, and also similar to previous published studies in the same region; species richness was greatest at the forest edge. The understory showed greater species richness in the forest interior, but greater diversity and equitability in the intermediate environment. Understory environments close to the forest edge demonstrated larger stem diameters than in the forest interior, although at lesser densities and with smaller total basal areas. Our results indicated the existence of distinct patterns in canopy and understory that most likely reflect differences in the response times of these two vegetation layers, with the understory being more sensitive to alterations in environmental structure.