Brennan Klein

Dr. Brennan Klein

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 May 2020 in Science
Verified
Journal Article
Open access
PDF file
MKMoritz U. G. Kraemer
Moritz U. G. Kraemer
CYChia-Hung Yang
Chia-Hung Yang
BGBernardo Gutierrez
Bernardo Gutierrez
CWChieh-Hsi Wu
Chieh-Hsi Wu
BKBrennan Klein
Brennan Klein
SSSamuel V. Scarpino
Samuel V. Scarpino
Tracing infection from mobility data: What sort of measures are required to contain the spread of severe acute respiratory syndrome–coronavirus 2 (SARS-CoV-2), which causes coronavirus disease 2019 (COVID-19)? The rich data from the Open COVID-19 Data Working Group include the dates when people first reported symptoms, not just a positive test date. Using these data and real-time travel data from the internet services company Baidu, Kraemer et al. found that mobility statistics offered a precise record of the spread of SARS-CoV-2 among the cities of China at the start of 2020. The frequency of introductions from Wuhan were predictive of the size of the epidemic sparked in other provinces. However, once the virus had escaped Wuhan, strict local control measures such as social isolation and hygiene, rather than long-distance travel restrictions, played the largest part in controlling SARS-CoV-2 spread. Science , this issue p. 493

22 July 2021 in Science
Verified
Journal Article
Open access
MKMoritz U. G. Kraemer
Moritz U. G. Kraemer
VHVerity Hill
Verity Hill
CRChristopher Ruis
Christopher Ruis
SDSimon Dellicour
Simon Dellicour
SBSumali Bajaj
Sumali Bajaj
OPOliver G. Pybus
Oliver G. Pybus
Fueling outbreaks: The B.1.1.7 lineage of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused fast-spreading outbreaks globally. Intrinsically, this variant has greater transmissibility than its predecessors, but this capacity has been amplified in some circumstances to tragic effect by a combination of human behavior and local immunity. What are the extrinsic factors that help or hinder the rapid dissemination of variants? Kraemer et al . explored the invasion dynamics of B.1.1.7. in fine detail, from its location of origin in Kent, UK, to its heterogenous spread around the country. A combination of mobile phone and virus data including more than 17,000 genomes shows how distinct phases of dispersal were related to intensity of mobility and the timing of lockdowns. As the local outbreaks grew, importation from the London source area became less important. Had B.1.1.7. emerged at a slightly different time of year, its impact might have been different. —CA

4 April 2020 in Complexity
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Journal Article
Open access
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BKBrennan Klein
Brennan Klein
EHErik P Hoel
Erik P Hoel
The connectivity of a network contains information about the relationships between nodes, which can denote interactions, associations, or dependencies. We show that this information can be analyzed by measuring the uncertainty (and certainty) contained in paths along nodes and links in a network. Specifically, we derive from first principles a measure known as effective information and describe its behavior in common network models. Networks with higher effective information contain more information in the relationships between nodes. We show how subgraphs of nodes can be grouped into macronodes, reducing the size of a network while increasing its effective information (a phenomenon known as causal emergence). We find that informative higher scales are common in simulated and real networks across biological, social, informational, and technological domains. These results show that the emergence of higher scales in networks can be directly assessed and that these higher scales offer a way to create certainty out of uncertainty.

4 May 2022 in Journal of Open Source Software
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Journal Article
Open access
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CHConor Heins
Conor Heins
BMBeren Millidge
Beren Millidge
DDDaphne Demekas
Daphne Demekas
BKBrennan Klein
Brennan Klein
KFKarl Friston
Karl Friston
ATAlexander Tschantz
Alexander Tschantz

15 April 2021 in Nature Communications
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Journal Article
Open access
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ANAnjalika Nande
Anjalika Nande
JSJustin Sheen
Justin Sheen
EWEmma L. Walters
Emma L. Walters
BKBrennan Klein
Brennan Klein
MCMatteo Chinazzi
Matteo Chinazzi
AHAlison L. Hill
Alison L. Hill
Massive unemployment during the COVID-19 pandemic could result in an eviction crisis in US cities. Here we model the effect of evictions on SARS-CoV-2 epidemics, simulating viral transmission within and among households in a theoretical metropolitan area. We recreate a range of urban epidemic trajectories and project the course of the epidemic under two counterfactual scenarios, one in which a strict moratorium on evictions is in place and enforced, and another in which evictions are allowed to resume at baseline or increased rates. We find, across scenarios, that evictions lead to significant increases in infections. Applying our model to Philadelphia using locally-specific parameters shows that the increase is especially profound in models that consider realistically heterogenous cities in which both evictions and contacts occur more frequently in poorer neighborhoods. Our results provide a basis to assess eviction moratoria and show that policies to stem evictions are a warranted and important component of COVID-19 control.

3 January 2024 in Collective Intelligence
Verified
Journal Article
Open access
KFKarl J Friston
Karl J Friston
MRMaxwell Jd Ramstead
Maxwell Jd Ramstead
AKAlex B. Kiefer
Alex B. Kiefer
ATAlexander Tschantz
Alexander Tschantz
CBChristopher L Buckley
Christopher L Buckley
GRGabriel René
Gabriel René
This white paper lays out a vision of research and development in the field of artificial intelligence for the next decade (and beyond). Its denouement is a cyber-physical ecosystem of natural and synthetic sense-making, in which humans are integral participants—what we call “shared intelligence.” This vision is premised on active inference, a formulation of adaptive behavior that can be read as a physics of intelligence, and which inherits from the physics of self-organization. In this context, we understand intelligence as the capacity to accumulate evidence for a generative model of one’s sensed world—also known as self-evidencing. Formally, this corresponds to maximizing (Bayesian) model evidence, via belief updating over several scales, that is, inference, learning, and model selection. Operationally, this self-evidencing can be realized via (variational) message passing or belief propagation on a factor graph. Crucially, active inference foregrounds an existential imperative of intelligent systems; namely, curiosity or the resolution of uncertainty. This same imperative underwrites belief sharing in ensembles of agents, in which certain aspects (i.e., factors) of each agent’s generative world model provide a common ground or frame of reference. Active inference plays a foundational role in this ecology of belief sharing—leading to a formal account of collective intelligence that rests on shared narratives and goals. We also consider the kinds of communication protocols that must be developed to enable such an ecosystem of intelligences and motivate the development of a shared hyper-spatial modeling language and transaction protocol, as a first—and key—step towards such an ecology.