Hodgkin and Huxley showed that even if the filaments are dissolved, a neuron’s membrane alone can generate and transmit the nerve spike. Regulating the time gap between spikes is the brain’s cognitive key. However, the time modula-tion mechanism is still a mystery. By inserting a coaxial probe deep inside a neuron, we have re-peatedly shown that the filaments transmit electromagnetic signals ~200 μs before an ionic nerve spike sets in. To understand its origin, here, we mapped the electromagnetic vortex produced by a filamentary bundle deep inside a neuron, regulating the nerve spike’s electrical-ionic vortex. We used monochromatic polarized light to measure the transmitted signals beating from the internal components of a cultured neuron. A nerve spike is a 3D ring of the electric field encompassing the perimeter of a neural branch. Several such vortices flow sequentially to keep precise timing for the brain’s cognition. The filaments hold millisecond order time gaps between membrane spikes with microsecond order signaling of electromagnetic vortices. Dielectric resonance images revealed that ordered filaments inside neural branches instruct the ordered grid-like network of actin–beta-spectrin just below the membrane. That layer builds a pair of electric field vortices, which coherently activates all ion-channels in a circular area of the membrane lipid bilayer when a nerve spike propagates. When biomaterials vibrate resonantly with microwave and radio-wave, simultaneous quantum optics capture ultra-fast events in a non-demolition mode, revealing multiple correlated time-domain operations beyond the Hodgkin–Huxley paradigm. Neuron holograms pave the way to understanding the filamentary circuits of a neural network in addition to membrane circuits.

Each tubulin protein molecule on the cylindrical surface of a microtubule, a fundamental element of the cytoskeleton, acts as a unit cell of a crystal sensor. Electromagnetic sensing enables the 2D surface of microtubule to act as a crystal or a collective electromagnetic signal processing system. We propose a model in which each tubulin dimer acts as the period of a one-dimensional crystal with effective electrical impedance related to its molecular structure. Based on the mathematical crystal theory with one-dimensional translational symmetry, we simulated the electrical transport properties of the signal across the microtubule length and compared it to our single microtubule experimental results. The agreement between theory and experiment suggests that one of the most essential components of any Eukaryotic cell acts as a one-dimensional crystal.