Suraj Sapkota

Dr. Suraj Sapkota


Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 January 2020 in Molecular Plant Pathology
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Journal Article
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SSSuraj Sapkota
Suraj Sapkota
MMMohamed Mergoum
Mohamed Mergoum
ZLZhaohui LIU
Zhaohui LIU
Xanthomonas translucens is a group of gram‐negative bacteria that can cause important diseases in cereal crops and forage grasses. Different pathovars have been defined according to their host ranges, and molecular and biochemical characteristics. Pathovars have been placed into two major groups: translucens and graminis. The translucens group contains the pathovars causing bacterial leaf streak (BLS) on cereal crops such as wheat, barley, triticale, rye, and oat. In recent years, BLS has re‐emerged as a major problem for many wheat‐ and barley‐producing areas worldwide. The biology of the pathogens and the host–pathogen interactions in cereal BLS diseases were poorly understood. However, recent genome sequence data have provided an insight into the bacterial phylogeny and identification and pathogenicity/virulence. Furthermore, identification of sources of resistance to BLS and mapping of the resistance genes have been initiated. Taxonomy: Kingdom Bacteria; Phylum Proteobacteria ; Class Gammaproteobacteria ; Order Xanthomonadales ; Family Xanthomonadacea e ; Genus Xanthomonas ; Species X. translucens ; translucens group pathovars: undulosa , translucens , cerealis , hordei , and secalis ; graminis group pathovars: arrhenatheri , graminis , poae , phlei ; newly established pathovar: pistaciae . Host range: X. translucens mainly infects plant species in the Poaceae with the translucens group on cereal crop species and the graminis group on forage grass species. However, some strains have been isolated from, and are able to infect, ornamental asparagus and pistachio trees. Most pathovars have a narrow host range, while a few can infect a broad range of hosts. Genome: The complete genome sequence is available for two X. translucens pv . undulosa strains and one pv. translucens strain . A draft genome sequence is also available for at least one strain from each pathovar. The X. translucens pv . undulosa strain Xt4699 was the first to have its complete genome sequenced, which consists of 4,561,137 bp with total GC content approximately at 68% and 3,528 predicted genes. Virulence mechanisms: Like most xanthomonads, X. translucens utilizes a type III secretion system (T3SS) to deliver a suite of T3SS effectors (T3Es) inside plant cells. Transcription activator‐like effectors, a special group of T3Es, have been identified in most of the X. translucens genomes, some of which have been implicated in virulence. Genetic factors determining host range virulence have also been identified.

15 October 2019 in Proceedings of the National Academy of Sciences
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ZPZhao Peng
Zhao Peng
YHYing Hu
Ying Hu
JZJunli Zhang
Junli Zhang
JHJose C. Huguet-Tapia
Jose C. Huguet-Tapia
ABAnna Block
Anna Block
FWFrank F. White
Frank F. White
Plants are vulnerable to disease through pathogen manipulation of phytohormone levels, which otherwise regulate development, abiotic, and biotic responses. Here, we show that the wheat pathogen Xanthomonas translucens pv. undulosa elevates expression of the host gene encoding 9- cis -epoxycarotenoid dioxygenase ( TaNCED-5BS ), which catalyzes the rate-limiting step in the biosynthesis of the phytohormone abscisic acid and a component of a major abiotic stress-response pathway, to promote disease susceptibility. Gene induction is mediated by a type III transcription activator-like effector. The induction of TaNCED-5BS results in elevated abscisic acid levels, reduced host transpiration and water loss, enhanced spread of bacteria in infected leaves, and decreased expression of the central defense gene TaNPR1 . The results represent an appropriation of host physiology by a bacterial virulence effector.

28 May 2022 in The Plant Genome
Verified
Journal Article
Open access
BGBikash Ghimire
Bikash Ghimire
MMMohamed Mergoum
Mohamed Mergoum
AMAlfredo D. Martinez‐Espinoza
Alfredo D. Martinez‐Espinoza
SSSuraj Sapkota
Suraj Sapkota
SPSumit Pradhan
Sumit Pradhan
JBJames W. Buck
James W. Buck
Host resistance is an effective and sustainable approach to manage the negative impact of Fusarium head blight (FHB) on wheat ( Triticum aestivum L.) grain yield and quality. The objective of this study was to characterize the phenotypic responses and identify quantitative trait loci (QTL) conditioning different FHB resistance types using a panel of 236 elite soft red winter wheat (SRWW) lines in a genome‐wide association study (GWAS). The panel was phenotyped for five FHB and three morphological traits under two field and two greenhouse environments in 2018–2019 and 2019–2020. We identified 160 significant marker–trait associations (MTAs) for FHB traits and 11 MTAs for plant height. Eleven QTL showed major effects and explained >10% phenotypic variation (PV) for FHB resistance. Among these major loci, three QTL were stable and five QTL exhibited a pleiotropic effect. The QTL QFhb‐3BL , QFhb‐5AS , QFhb‐5BL , QFhb‐7AS.1 , QFhb‐7AS.2 , and QFhb‐7BS are presumed to be novel. Pyramiding multiple resistance alleles from all the major‐effect QTL resulted in a significant reduction in FHB incidence, severity, index, deoxynivalenol (DON), and Fusarium ‐damaged kernel (FDK) by 17, 43, 45, 55, and 25%, respectively. Further validation of these QTL could potentially facilitate successful introgression of these resistance loci in new cultivars for improved FHB resistance in breeding programs.

1 March 2022 in Phytopathology®
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Journal Article
Closed access
SSSuraj Sapkota
Suraj Sapkota
KCKatherine E. Catching
Katherine E. Catching
PRPaul L. Raymer
Paul L. Raymer
AMAlfredo D. Martinez-Espinoza
Alfredo D. Martinez-Espinoza
BBBochra Bahri
Bochra Bahri
Dollar spot, caused by fungal pathogens Clarireedia spp. (formerly Sclerotinia homoeocarpa), is the most common and widely distributed disease of turfgrass worldwide. It can drastically reduce the quality of turfgrass species and affect their aesthetic value and playability. Management of dollar spot typically includes a costly program of multiple application of fungicides within a growing season. Consequently, there have been reported cases of fungicide resistance in populations of Clarireedia spp. Host resistance could be an important component of dollar spot management; however, this approach has been hampered by the lack of sources of resistance because nearly all known warm- and cool-season turfgrass species are susceptible. With the recent advancement in genome sequencing technologies, studies on pathogen genomics and host–pathogen interactions are emerging with the hope of revealing candidate resistance genes in turfgrass and genes for virulence and pathogenicity in Clarireedia spp. Large-scale screening of turfgrass germplasm and quantitative trait locus (QTL) analysis for dollar spot resistance are important for resistance breeding, but only a handful of such studies have been conducted to date. This review summarizes currently available information on the dollar spot pathosystem, taxonomy, pathogen genomics, host–pathogen interaction, genetics of resistance, and QTL mapping and also provides some thoughts for future research prospects to better manage this disease.

13 January 2022 in Agronomy
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LCLei Chu
Lei Chu
YGYiping Gao
Yiping Gao
LCLingling Chen
Lingling Chen
PMPatrick E. McCullough
Patrick E. McCullough
DJDavid Jespersen
David Jespersen
JYJialin Yu
Jialin Yu
White clover (Trifolium repens L.) is cultivated as a forage crop and planted in various landscapes for soil conservation. There are numerous reports of failed white clover stands each year. A good understanding of the seed germination biology of white clover in relation to environmental factors is essential to achieve successful stand establishment. A series of experiments were conducted to investigate the impacts of light, temperature, planting depth, drought, and salt stress on seed germination and the emergence of white clover. White clover is negatively photoblastic, and seed germination averaged 63 and 66% under light and complete dark conditions 4 weeks after planting (WAP), respectively. Temperature affected the seed germination speed and rate. At 1 WAP, seeds incubated at 15 to 25 °C demonstrated a significantly higher germination rate than the low temperatures at 5 and 10 °C; however, the germination rate did not differ among the temperature treatments at 4 WAP. The results suggest that white clover germination decreases with increasing sowing depths, and the seeds should be sown on the soil surface or shallowly buried at a depth ≤1 cm to achieve an optimal emergence. White clover seeds exhibited high sensitivity to drought and salinity stress. The osmotic potential and NaCl concentration required to inhibit 50% seed germination were −0.19 MPa and 62.4 mM, respectively. Overall, these findings provide quantifiable explanations for inconsistent establishment observed in field conditions. The results obtained in this research can be used to develop effective planting strategies and support the successful establishment of white clover stands.

22 June 2021 in Frontiers in Genetics
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Journal Article
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SRS. M. Hisam A. Rabbi
S. M. Hisam A. Rabbi
AKAjay Kumar
Ajay Kumar
SNSepehr Mohajeri Naraghi
Sepehr Mohajeri Naraghi
Senay SimsekSenay Simsek
Senay Simsek
SSSuraj Sapkota
Suraj Sapkota
MMMohamed Mergoum
Mohamed Mergoum
Understanding the genetics of drought tolerance in hard red spring wheat (HRSW) in northern USA is a prerequisite for developing drought-tolerant cultivars for this region. An association mapping (AM) study for drought tolerance in spring wheat in northern USA was undertaken using 361 wheat genotypes and Infinium 90K single-nucleotide polymorphism (SNP) assay. The genotypes were evaluated in nine different locations of North Dakota (ND) for plant height (PH), days to heading (DH), yield (YLD), test weight (TW), and thousand kernel weight (TKW) under rain-fed conditions. Rainfall data and soil type of the locations were used to assess drought conditions. A mixed linear model (MLM), which accounts for population structure and kinship (PC+K), was used for marker–trait association. A total of 69 consistent QTL involved with drought tolerance-related traits were identified, with p ≤ 0.001. Chromosomes 1A, 3A, 3B, 4B, 4D, 5B, 6A, and 6B were identified to harbor major QTL for drought tolerance. Six potential novel QTL were identified on chromosomes 3D, 4A, 5B, 7A, and 7B. The novel QTL were identified for DH, PH, and TKW. The findings of this study can be used in marker-assisted selection (MAS) for drought-tolerance breeding in spring wheat.