Isabel Rio-Torto

Ms. Isabel Rio-Torto

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 September 2022 in IEEE Access
Verified
Journal Article
Open access
Tiago GonçalvesTiago Gonçalves
Tiago Gonçalves
IRIsabel Rio-Torto
Isabel Rio-Torto
LTLuis Teixeira
Luis Teixeira
JCJaime Cardoso
Jaime Cardoso
The increasing popularity of attention mechanisms in deep learning algorithms for computer vision and natural language processing made these models attractive to other research domains. In healthcare, there is a strong need for tools that may improve the routines of the clinicians and the patients. Naturally, the use of attention-based algorithms for medical applications occurred smoothly. However, being healthcare a domain that depends on high-stake decisions, the scientific community must ponder if these high-performing algorithms fit the needs of medical applications. With this motto, this paper extensively reviews the use of attention mechanisms in machine learning methods (including Transformers) for several medical applications based on the types of tasks that may integrate several works pipelines of the medical domain. This work distinguishes itself from its predecessors by proposing a critical analysis of the claims and potentialities of attention mechanisms presented in the literature through an experimental case study on medical image classification with three different use cases. These experiments focus on the integrating process of attention mechanisms into established deep learning architectures, the analysis of their predictive power, and a visual assessment of their saliency maps generated by post-hoc explanation methods. This paper concludes with a critical analysis of the claims and potentialities presented in the literature about attention mechanisms and proposes future research lines in medical applications that may benefit from these frameworks.

1 May 2020 in Pattern Recognition Letters
Verified
Journal Article
Closed access
IRIsabel Rio-Torto
Isabel Rio-Torto
KFKelwin Fernandes
Kelwin Fernandes
LTLuis Teixeira
Luis Teixeira

3 June 2022 in Applied Sciences
Verified
Journal Article
Open access
PDF file
IRIsabel Rio-Torto
Isabel Rio-Torto
ACAna Teresa Campaniço
Ana Teresa Campaniço
PPPedro Pinho
Pedro Pinho
Vítor Jesus FilipeVítor Jesus Filipe
Vítor Jesus Filipe
LTLuis Teixeira
Luis Teixeira
The still prevalent use of paper conformity lists in the automotive industry has a serious negative impact on the performance of quality control inspectors. We propose instead a hybrid quality inspection system, where we combine automated detection with human feedback, to increase worker performance by reducing mental and physical fatigue, and the adaptability and responsiveness of the assembly line to change. The system integrates the hierarchical automatic detection of the non-conforming vehicle parts and information visualization on a wearable device to present the results to the factory worker and obtain human confirmation. Besides designing a novel 3D vehicle generator to create a digital representation of the non conformity list and to collect automatically annotated training data, we apply and aggregate in a novel way state-of-the-art domain adaptation and pseudo labeling methods to our real application scenario, in order to bridge the gap between the labeled data generated by the vehicle generator and the real unlabeled data collected on the factory floor. This methodology allows us to obtain, without any manual annotation of the real dataset, an example-based F1 score of 0.565 in an unconstrained scenario and 0.601 in a fixed camera setup (improvements of 11 and 14.6 percentage points, respectively, over a baseline trained with purely simulated data). Feedback obtained from factory workers highlighted the usefulness of the proposed solution, and showed that a truly hybrid assembly line, where machine and human work in symbiosis, increases both efficiency and accuracy in automotive quality control.

10 October 2025 in Computers in Biology and Medicine
Verified
Journal Article
Open access
CPCristiano Patrício
Cristiano Patrício
IRIsabel Rio-Torto
Isabel Rio-Torto
JCJaime Cardoso
Jaime Cardoso
LTLuis Teixeira
Luis Teixeira
João C. NevesJoão C. Neves
João C. Neves
The main challenges limiting the adoption of deep learning-based solutions in medical workflows are the availability of annotated data and the lack of interpretability of such systems. Concept Bottleneck Models (CBMs) tackle the latter by constraining the model output on a set of predefined and human-interpretable concepts. However, the increased interpretability achieved through these concept-based explanations implies a higher annotation burden. Moreover, if a new concept needs to be added, the whole system needs to be retrained. Inspired by the remarkable performance shown by Large Vision-Language Models (LVLMs) in few-shot settings, we propose a simple, yet effective, methodology, CBVLM, which tackles both of the aforementioned challenges. First, for each concept, we prompt the LVLM to answer if the concept is present in the input image. Then, we ask the LVLM to classify the image based on the previous concept predictions. Moreover, in both stages, we incorporate a retrieval module responsible for selecting the best examples for in-context learning. By grounding the final diagnosis on the predicted concepts, we ensure explainability, and by leveraging the few-shot capabilities of LVLMs, we drastically lower the annotation cost. We validate our approach with extensive experiments across four medical datasets and twelve LVLMs (both generic and medical) and show that CBVLM consistently outperforms CBMs and task-specific supervised methods without requiring any training and using just a few annotated examples. More information on our project page: https://cristianopatricio.github.io/CBVLM/.

8 March 2024
Verified
Book Chapter
Closed access
PDF file
MDMeghal Dani
Meghal Dani
IRIsabel Rio-Torto
Isabel Rio-Torto
SAStephan Alaniz
Stephan Alaniz
ZAZeynep Akata
Zeynep Akata