Kogiku Shiba

Dr. Kogiku Shiba

orcid

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 August 2022 in Nature Ecology & Evolution
Verified
Journal Article
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EHEisuke Hayakawa
Eisuke Hayakawa
CGChristine Guzman
Christine Guzman
OHOsamu Horiguchi
Osamu Horiguchi
CKChihiro Kawano
Chihiro Kawano
ASAkira Shiraishi
Akira Shiraishi
HWHiroshi Watanabe
Hiroshi Watanabe
The evolutionary origins of neurons remain unknown. Although recent genome data of extant early-branching animals have shown that neural genes existed in the common ancestor of animals, the physiological and genetic properties of neurons in the early evolutionary phase are still unclear. Here, we performed a mass spectrometry-based comprehensive survey of short peptides from early-branching lineages Cnidaria, Porifera and Ctenophora. We identified a number of mature ctenophore neuropeptides that are expressed in neurons associated with sensory, muscular and digestive systems. The ctenophore peptides are stored in vesicles in cell bodies and neurites, suggesting volume transmission similar to that of cnidarian and bilaterian peptidergic systems. A comparison of genetic characteristics revealed that the peptide-expressing cells of Cnidaria and Ctenophora express the vast majority of genes that have pivotal roles in maturation, secretion and degradation of neuropeptides in Bilateria. Functional analysis of neuropeptides and prediction of receptors with machine learning demonstrated peptide regulation of a wide range of target effector cells, including cells of muscular systems. The striking parallels between the peptidergic neuronal properties of Cnidaria and Bilateria and those of Ctenophora, the most basal neuron-bearing animals, suggest a common evolutionary origin of metazoan peptidergic nervous systems.

21 January 2020 in PLOS Genetics
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AMAkane Morohoshi
Akane Morohoshi
HMHaruhiko Miyata
Haruhiko Miyata
KSKeisuke Shimada
Keisuke Shimada
KNKaori Nozawa
Kaori Nozawa
TMTakafumi Matsumura
Takafumi Matsumura
MIMasahito Ikawa
Masahito Ikawa
Flagella and cilia are evolutionarily conserved cellular organelles. Abnormal formation or motility of these organelles in humans causes several syndromic diseases termed ciliopathies. The central component of flagella and cilia is the axoneme that is composed of the ‘9+2’ microtubule arrangement, dynein arms, radial spokes, and the Nexin-Dynein Regulatory Complex (N-DRC). The N-DRC is localized between doublet microtubules and has been extensively studied in the unicellular flagellate Chlamydomonas. Recently, it has been reported that TCTE1 (DRC5), a component of the N-DRC, is essential for proper sperm motility and male fertility in mice. Further, TCTE1 has been shown to interact with FBXL13 (DRC6) and DRC7; however, functional roles of FBXL13 and DRC7 in mammals have not been elucidated. Here we show that Fbxl13 and Drc7 expression are testes-enriched in mice. Although Fbxl13 knockout (KO) mice did not show any obvious phenotypes, Drc7 KO male mice were infertile due to their short immotile spermatozoa. In Drc7 KO spermatids, the axoneme is disorganized and the ‘9+2’ microtubule arrangement was difficult to detect. Further, other N-DRC components fail to incorporate into the flagellum without DRC7. These results indicate that Drc7, but not Fbxl13, is essential for the correct assembly of the N-DRC and flagella. In recent years, almost one in six couples face infertility, and nearly 50% of cases are attributed to male factors. It has been shown that approximately 15% of male infertility is caused by genetic factors. The conditions of male infertility mainly include spermatozoa with abnormal morphology (teratozoospermia), reduced sperm motility (asthenozoospermia), and no or low sperm count (azoospermia). Multiple morphological abnormalities of the sperm flagella (MMAF) are characterized as asthenoteratozoospermia, which is a condition with abnormal sperm tail morphology, including absent, coiled, bent, or short tails. Sperm tails are formed during spermiogenesis; however, the mechanism that govern tail formation remains unclear. Here we mutated Fbxl113 and Drc7, two genes with strong expression in mouse testis and which have been shown to be important for flagellum formation and regulation in other systems. Deletion of Drc7 leads to aberrant tail formation in mouse spermatozoa that phenocopies patients with MMAF, while deletion of Fbxl13 has no observable effect on sperm function. Our results identified Drc7 as an important factor for sperm flagellum formation.

1 August 2008
Verified
Conference Paper
Closed access
HOHiromasa Oku
Hiromasa Oku
MIMasatoshi Ishikawa
Masatoshi Ishikawa
NONaoko Ogawa
Naoko Ogawa
KSKogiku Shiba
Kogiku Shiba
Manabu YoshidaManabu Yoshida
Manabu Yoshida
In this paper, we report how to track quickly and vigorously swimming ascidian spermatozoa using high-speed visual feedback at a frame rate of 1 kHz. Ascidian spermatozoa swim as fast as 300 μm/s by rotating their flagella 50 times/s. This vigorous swimming style has prevented stable image observation and made it difficult to track them reliably with our previously developed visual tracking system. Here, we describe how we overcame these problems using image processing techniques to achieve stable tracking of fast, small ascidian spermatozoa for more than 180 s using high-speed visual feedback.

26 February 2021 in Science Advances
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OKOsamu Kutomi
Osamu Kutomi
RYRyosuke Yamamoto
Ryosuke Yamamoto
KHKeiko Hirose
Keiko Hirose
KMKatsutoshi Mizuno
Katsutoshi Mizuno
YNYuuhei Nakagiri
Yuuhei Nakagiri
KIKazuo Inaba
Kazuo Inaba
Light-responsive regulation of ciliary motility is known to be conducted through modulation of dyneins, but the mechanism is not fully understood. Here, we report a novel subunit of the two-headed f/I1 inner arm dynein, named DYBLUP, in animal spermatozoa and a unicellular green alga. This subunit contains a BLUF (sensors of blue light using FAD) domain that appears to directly modulate dynein activity in response to light. DYBLUP (dynein-associated BLUF protein) mediates the connection between the f/I1 motor domain and the tether complex that links the motor to the doublet microtubule. Chlamydomonas lacking the DYBLUP ortholog shows both positive and negative phototaxis but becomes acclimated and attracted to high-intensity blue light. These results suggest a mechanism to avoid toxic strong light via direct photoregulation of dyneins.

4 December 2022 in Ecology and Evolution
Verified
Journal Article
Open access
TITakeshi Ito
Takeshi Ito
MMMasaya Morita
Masaya Morita
SOSeiya Okuno
Seiya Okuno
KIKazuo Inaba
Kazuo Inaba
KSKogiku Shiba
Kogiku Shiba
SASatoshi Awata
Satoshi Awata
Fertilization mode may affect sperm characteristics, such as morphology, velocity, and motility. However, there is little information on how fertilization mode affects sperm evolution because several factors (e.g., sperm competition) are intricately intertwined when phylogenetically distant species are compared. Here, we investigated sperm characteristics by comparing seven externally and four internally fertilizing marine fishes from three different groups containing close relatives, considering sperm competition levels. The sperm head was significantly slenderer in internal fertilizers than in external fertilizers, suggesting that a slender head is advantageous for swimming in viscous ovarian fluid or in narrow spaces of the ovary. In addition, sperm motility differed between external and internal fertilizers; sperm of external fertilizers were only motile in seawater, whereas sperm of internal fertilizers were only motile in an isotonic solution. These results suggest that sperm motility was adapted according to fertilization mode. By contrast, total sperm length and sperm velocity were not associated with fertilization mode, perhaps because of the different levels of sperm competition. Relative testis mass (an index of sperm competition level) was positively correlated with sperm velocity and negatively correlated with the ratio of sperm head length to total sperm length. These findings suggest that species with higher levels of sperm competition have faster sperm with longer flagella relative to the head length. These results contradict the previous assumption that the evolution of internal fertilization increases the total sperm length. In addition, copulatory behavior with internal insemination may involve a large genital morphology, but this is not essential in fish, suggesting the existence of various sperm transfer methods. Although the power of our analyses is not strong because of the limited number of species, we propose a new scenario of sperm evolution in which internal fertilization would increase sperm head length, but not total sperm length, and change sperm motility.

31 July 2007 in Journal of Neuroendocrinology
Verified
Journal Article
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TFTatiana Fiordelisio
Tatiana Fiordelisio
NJN. Jiménez
N. Jiménez
SBS. Baba
S. Baba
KSKogiku Shiba
Kogiku Shiba
AHArturo Hernandez-Cruz
Arturo Hernandez-Cruz