Fernando Berton Zanchi

Dr. Fernando Berton Zanchi

orcid

Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2014 in BioMed Research International
Verified
Journal Article
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LILuiz Fernando M. Izidoro
Luiz Fernando M. Izidoro
JSJuliana C. Sobrinho
Juliana C. Sobrinho
MMMirian M. Mendes
Mirian M. Mendes
TCTássia R. Costa
Tássia R. Costa
AGAmy N. Grabner
Amy N. Grabner
ASAndreimar Soares
Andreimar Soares
L-amino acid oxidases are enzymes found in several organisms, including venoms of snakes, where they contribute to the toxicity of ophidian envenomation. Their toxicity is primarily due to enzymatic activity, but other mechanisms have been proposed recently which require further investigation. L-amino acid oxidases exert biological and pharmacological effects, including actions on platelet aggregation and the induction of apoptosis, hemorrhage, and cytotoxicity. These proteins present a high biotechnological potential for the development of antimicrobial, antitumor, and antiprotozoan agents. This review provides an overview of the biochemical properties and pharmacological effects of snake venom L-amino acid oxidases, their structure/activity relationship, and supposed mechanisms of action described so far.

22 March 2023 in BMC Bioinformatics
Verified
Journal Article
Open access
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IVIvo Henrique Provensi Vieira
Ivo Henrique Provensi Vieira
EBEduardo Buganemi Botelho
Eduardo Buganemi Botelho
TGThales Junior de Souza Gomes
Thales Junior de Souza Gomes
RKRoger Kist
Roger Kist
RCRafael Andrade Caceres
Rafael Andrade Caceres
FZFernando Berton Zanchi
Fernando Berton Zanchi
Background: The molecular dynamics is an approach to obtain kinetic and thermodynamic characteristics of biomolecular structures. The molecular dynamics simulation softwares are very useful, however, most of them are used in command line form and continue with the same common implementation difficulties that plague researchers who are not computer specialists. Results: Here, we have developed the VisualDynamics—a WEB tool developed to automate biological simulations performed in Gromacs using a graphical interface to make molecular dynamics simulation user-friendly task. In this new application the researcher can submit a simulation of the protein in the free form or complexed with a ligand. Can also download the graphics analysis and log files at the end of the simulation. Conclusions: VisualDynamics is a tool that will accelerate implementations and learning in the area of molecular dynamics simulation. Freely available at https://visualdynamics.fiocruz.br/login, is supported by all major web browsers. VisualDynamics was developed with Flask, which is a Python-based free and open-source framework for web development. The code is freely available for download at GitHub https://github.com/LABIOQUIM/visualdynamics.

30 March 2016 in PLOS ONE
Verified
Journal Article
Open access
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NPNidiane D. R. Prado
Nidiane D. R. Prado
SPSoraya S. Pereira
Soraya S. Pereira
MSMichele P. da Silva
Michele P. da Silva
MMMichelle S. S. Morais
Michelle S. S. Morais
AKAnderson M. Kayano
Anderson M. Kayano
CFCarla Fernandes
Carla Fernandes
Antivenoms, produced using animal hyperimmune plasma, remains the standard therapy for snakebites. Although effective against systemic damages, conventional antivenoms have limited efficacy against local tissue damage. Additionally, the hypersensitivity reactions, often elicited by antivenoms, the high costs for animal maintenance, the difficulty of producing homogeneous lots, and the instability of biological products instigate the search for innovative products for antivenom therapy. In this study, camelid antibody fragments (VHH) with specificity to Bothropstoxin I and II (BthTX-I and BthTX-II), two myotoxic phospholipases from Bothrops jararacussu venom, were selected from an immune VHH phage display library. After biopanning, 28 and 6 clones recognized BthTX-I and BthTX-II by ELISA, respectively. Complementarity determining regions (CDRs) and immunoglobulin frameworks (FRs) of 13 VHH-deduced amino acid sequences were identified, as well as the camelid hallmark amino acid substitutions in FR2. Three VHH clones (KF498607, KF498608, and KC329718) were capable of recognizing BthTX-I by Western blot and showed affinity constants in the nanomolar range against both toxins. VHHs inhibited the BthTX-II phospholipase A2 activity, and when tested for cross-reactivity, presented specificity to the Bothrops genus in ELISA. Furthermore, two clones (KC329718 and KF498607) neutralized the myotoxic effects induced by B. jararacussu venom, BthTX-I, BthTX-II, and by a myotoxin from Bothrops brazili venom (MTX-I) in mice. Molecular docking revealed that VHH CDRs are expected to bind the C-terminal of both toxins, essential for myotoxic activity, and to epitopes in the BthTX-II enzymatic cleft. Identified VHHs could be a biotechnological tool to improve the treatment for snake envenomation, an important and neglected world public health problem.

1 September 2015 in Toxicon
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Journal Article
Closed access
ATAngelo L.C. Terra
Angelo L.C. Terra
LMLeandro S. Moreira-Dill
Leandro S. Moreira-Dill
RSRodrigo Simões-Silva
Rodrigo Simões-Silva
JMJosé Roniele N. Monteiro
José Roniele N. Monteiro
WCWalter L.G. Cavalcante
Walter L.G. Cavalcante
ASAndreimar Soares
Andreimar Soares

1 June 2016 in Toxicon
Verified
Journal Article
Closed access
ECEdailson A. Corrêa
Edailson A. Corrêa
AKAnderson M. Kayano
Anderson M. Kayano
RSRafaela Sousa
Rafaela Sousa
SSSulamita S. Setúbal
Sulamita S. Setúbal
FZFernando Berton Zanchi
Fernando Berton Zanchi
LCLeonardo Calderon
Leonardo Calderon

11 November 2016 in Current Pharmaceutical Biotechnology
Verified
Journal Article
Closed access
JSJuliana Sobrinho
Juliana Sobrinho
RSRodrigo Simões-Silva
Rodrigo Simões-Silva
RHRudson Holanda
Rudson Holanda
JAJorge Javier Alfonso
Jorge Javier Alfonso
AGAna Gomez
Ana Gomez
ASAndreimar Soares
Andreimar Soares
Cancer, a disease that currently affects approximately 14 million people, is characterized by abnormal cell growth with altered replication capacity, which leads to the development of tumor masses without apoptotic control. Resistance to the drugs used in chemotherapy and their side effects stimulate scientific research seeking new therapies to combat this disease. Molecules from flora and fauna with cytotoxic activity against tumor cells have been studied for their potential to become a source of pharmaceutical agents. In this regard, snake venoms have a variety of proteins and peptides that have proven biotechnological potential. In several studies, antibacterial action and antitumor activity have been observed. One of the most widely studied venom components are phospholipases A2. Snake venom phospholipases A2 (svPLA2s) comprise a large class of molecules that catalyze the hydrolysis of the sn-2 position of phospholipids releasing fatty acids and lysophospholipids and are related to a broad spectrum of biotechnological activities. In addition to their specific cytotoxicity against some tumor cell lines, inhibitory activity of angiogenesis, adhesion and cell migration has been described. The antitumor activity of svPLA2s was observed both in vitro and in vivo, but little is known about the mechanism of action of these proteins in promoting this activity. In this review, the main structural and functional characteristics of svPLA2s are discussed, along with the mechanisms proposed, thus far, to explain their antitumor activity, targeting their potential use as a therapeutic alternative against cancer.