Fouling, particularly from biofouling, organic and colloidal fouling, and scale formation, presents a significant challenge in RO/NF treatment of marginal waters. The previous review (Part 1) shed light on fouling behavior by LMWOCs and its underlying mechanisms. Part 2 outlines countermeasures to solve this problem and applications utilizing the LMWOCs. Key preventive strategies include pretreatment, early detection, cleaning, optimized operation procedures, and in-situ membrane modification. Correctly predicting the extent of fouling is essential as a first step. Flat-sheet membranes or small-diameter modules can be used for a preliminary test. Long-term testing is not necessary to elucidate the extent of LMWOC fouling; typically, 3 to 4 days is sufficient. So far, no fouling index applicable to LMWCO fouling exists. For this purpose, hydrophobic membranes such as polyamide are proposed instead of the standard silt density index (SDI) filter. Once the extent of LMWOC fouling is evaluated, a suitable pretreatment method can be selected, including adsorbents, specialty water filters, oxidative decomposition, and antifoulants. When no appropriate pretreatment is viable, alternative approaches such as high pH operation may be considered. Cleaning is necessary when membranes are fouled. However, regular cleaning often does not restore the original flow. Thus, special CIP chemicals, such as organic solvent-based and oxidative cleaning agents, are required. On the other hand, although fouling due to LMWCO initially reduces the flow rate, it usually reaches a steady value. Therefore, if the accompanying operating pressure increase can be tolerated, there is no need to restore the initial performance with strong cleaning chemicals. When a significant drop in flow rate occurs and LMWOC fouling is suspected, the cause can be identified by analyzing the fouled membranes. However, LMWCOs cannot often be identified by regular FT-IR analysis. In this case, the membrane is subjected to solvent extraction and then analyzed by GC-MS. Pyrolysis GC-MS, which does not require extraction, seems to be a promising technique. The review concludes by examining how LMWOCs can be strategically utilized to enhance membrane rejection and restore deteriorated membranes.