Stanislav Rubakhin

Dr. Stanislav Rubakhin

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 February 2013 in Current Opinion in Biotechnology
Verified
Journal Article
Closed access
SRStanislav Rubakhin
Stanislav Rubakhin
ELEric J Lanni
Eric J Lanni
JSJonathan Sweedler
Jonathan Sweedler

9 October 2015 in Foods
Verified
Journal Article
Open access
PDF file
JEJohn Erdman
John Erdman
JSJoshua Smith
Joshua Smith
MKMatthew John John Kuchan
Matthew John John Kuchan
EMEmily S. Mohn
Emily S. Mohn
EJElizabeth Johnson
Elizabeth Johnson
MNMartha Neuringer
Martha Neuringer
Lutein is one of the most prevalent carotenoids in nature and in the human diet. Together with zeaxanthin, it is highly concentrated as macular pigment in the foveal retina of primates, attenuating blue light exposure, providing protection from photo-oxidation and enhancing visual performance. Recently, interest in lutein has expanded beyond the retina to its possible contributions to brain development and function. Only primates accumulate lutein within the brain, but little is known about its distribution or physiological role. Our team has begun to utilize the rhesus macaque (Macaca mulatta) model to study the uptake and bio-localization of lutein in the brain. Our overall goal has been to assess the association of lutein localization with brain function. In this review, we will first cover the evolution of the non-human primate model for lutein and brain studies, discuss prior association studies of lutein with retina and brain function, and review approaches that can be used to localize brain lutein. We also describe our approach to the biosynthesis of 13C-lutein, which will allow investigation of lutein flux, localization, metabolism and pharmacokinetics. Lastly, we describe potential future research opportunities.

5 July 2010
Verified
Book Chapter
Open access
PDF file
SRStanislav Rubakhin
Stanislav Rubakhin
JSJonathan Sweedler
Jonathan Sweedler
Mass spectrometry imaging (MSI), a rapidly growing subfield of chemical imaging, employs mass spectrometry (MS) technologies to create single- and multi-dimensional localization maps for a variety of atoms and molecules. Complimentary to other imaging approaches, MSI provides high chemical specificity and broad analyte coverage. This powerful analytical toolset is capable of measuring the distribution of many classes of inorganics, metabolites, proteins, and pharmaceuticals in chemically and structurally complex biological specimens in vivo, in vitro, and in situ. The MSI approaches highlighted in this Methods in Molecular Biology volume provide flexibility of detection, characterization, and identification of multiple known and unknown analytes. The goal of this chapter is to introduce investigators who may be unfamiliar with MS to the basic principles of the mass spectrometric approaches as used in MSI. In addition to guidelines for choosing the most suitable MSI method for specific investigations, cross-references are provided to the chapters in this volume that describe the appropriate experimental protocols.

27 August 2022 in Metabolites
Verified
Journal Article
Open access
PDF file
CLCindy Jung Lee
Cindy Jung Lee
JSJack H. Schnieders
Jack H. Schnieders
SRStanislav Rubakhin
Stanislav Rubakhin
APAmit V. Patel
Amit V. Patel
CLChengyang Liu
Chengyang Liu
JSJonathan Sweedler
Jonathan Sweedler
The pancreatic islets of Langerhans are clusters of cells that function as endocrine units synthesizing and releasing insulin and a range of additional peptide hormones. The structural and chemical characteristics of islets change during type 2 diabetes development. Although a range of metabolites including neurotransmitters has been reported in rodent islets, the involvement of these cell-to-cell signaling molecules within human pancreatic islets in the pathophysiology of type 2 diabetes is not well known, despite studies suggesting that these molecules impact intra- and inter-islet signaling pathways. We characterize the enigmatic cell-to-cell signaling molecules, d-serine (d-Ser) and d-aspartate (d-Asp), along with multiple classical neurotransmitters and related molecules, in healthy versus type 2 diabetes-affected human islets using capillary electrophoresis separations. Significantly reduced d-Ser percentage and gamma-aminobutyric acid (GABA) levels were found in type 2 diabetes-affected islets compared to healthy islets. In addition, the negative correlations of many of the signaling molecules, such as d-Ser percentage (r = −0.35), d-Asp (r = −0.32), serotonin (r = −0.42), and GABA (r = −0.39) levels, with hemoglobin A1c (HbA1c) levels and thus with the progression of type 2 diabetes further demonstrate the disruption in intra- or inter-islet signaling pathways and suggest that these cell-to-cell signaling molecules may be potential therapeutic targets.

23 May 2025 in Journal of Visualized Experiments
Verified
Journal Article
Closed access
PDF file
SCSeth W. Croslow
Seth W. Croslow
TTTimothy J. Trinklein
Timothy J. Trinklein
SLSiheun Lee
Siheun Lee
SRStanislav Rubakhin
Stanislav Rubakhin
JSJonathan Sweedler
Jonathan Sweedler
Single-cell measurements are critical to understanding the rich spatiochemical heterogeneity of the brain. Matrix-assisted laser/desorption ionization (MALDI) mass spectrometry (MS) is capable of label-free, high-throughput characterization of endogenous molecules in individual cells. The recent advances in the development of MALDI mass spectrometers with laser-induced post-ionization (MALDI-2) provide greatly enhanced sensitivity of detection for a variety of lipids and other small molecules. However, MS imaging of large samples with MALDI-2 at cellular resolution is prohibitively slow for most applications. In this protocol, primary cells are isolated and dispersed onto conductive slides. Relative cell locations are determined by whole-slide fluorescence microscopy, followed by accurate coregistration of the microscopy coordinates to the stage coordinates of the MALDI-2 mass spectrometer. Targeted MS analysis of only cell locations provides high-throughput, single-cell measurements with high analyte coverage and reduced data size as compared to MS imaging of the entire sample. We describe the critical steps necessary for single-cell preparation, whole-slide fluorescence imaging, matrix application, and MALDI-2 mass spectrometry.

5 June 2025 in ChemRxiv
Verified
Preprint
Open access
PDF file
SOSamuel Okyem
Samuel Okyem
TTTimothy Trinklein
Timothy Trinklein
SRStanislav Rubakhin
Stanislav Rubakhin
JSJonathan Sweedler
Jonathan Sweedler
Imaging endogenous peptides with chiral selectivity remains an unmet analytical challenge. D-amino acid-containing peptides (DAACPs), formed by post-translational isomerization of L- to D-amino acids, are a functionally important class of neuropeptides whose spatial distribution remains poorly understood. Here, we introduce untargeted imaging of neuropeptide stereoisomers using matrix-assisted laser desorption/ionization trapped ion mobility mass spectrometry imaging (MALDI-TIMS-MSI). We mapped neuropeptides and their DAACP forms in the central nervous system of A. californica at single-cell resolution. We found that while both stereoisomeric forms of known neuropeptides were colocalized in nerves and neuropil, DAACPs were not detected in neuronal soma. For example, the L-form of small cardioactive peptide B was detected at high levels in the B1 and B2 neurons of the buccal ganglion but the DAA containing form was not detected; however, the DAACP form of small cardioactive peptide B was found in the neuropil of the B1 and B2 neurons in other ganglia. To confirm our assignments and eliminate isobaric interferences, we performed tandem MS with MALDI-TIMS-MSI. In total, we resolved thirteen peptide stereoisomers from six endogenous neuropeptides. These results demonstrate that MALDI-TIMS-MSI is an effective approach for characterizing and mapping peptide stereoisomers in situ, providing critical insight into the spatial regulation of neuropeptide isomerization.