Pedro Simões

Dr. Pedro Simões

orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 August 2008 in Evolution
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Journal Article
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PSPedro Simões
Pedro Simões
JSJosiane Santos
Josiane Santos
IFInês Fragata
Inês Fragata
LMLaurence D. Mueller
Laurence D. Mueller
MRMichael Rose
Michael Rose
Margarida MatosMargarida Matos
Margarida Matos

30 October 2012 in Journal of Evolutionary Biology
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Journal Article
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JSJ. Santos
J. Santos
MPM. Pascual
M. Pascual
PSPedro Simões
Pedro Simões
IFI. Fragata
I. Fragata
MLM. Lima
M. Lima
Margarida MatosMargarida Matos
Margarida Matos
Most founding events entail a reduction in population size, which in turn leads to genetic drift effects that can deplete alleles. Besides reducing neutral genetic variability, founder effects can in principle shift additive genetic variance for phenotypes that underlie fitness. This could then lead to different rates of adaptation among populations that have undergone a population size bottleneck as well as an environmental change, even when these populations have a common evolutionary history. Thus, theory suggests that there should be an association between observable genetic variability for both neutral markers and phenotypes related to fitness. Here, we test this scenario by monitoring the early evolutionary dynamics of six laboratory foundations derived from founders taken from the same source natural population of Drosophila subobscura. Each foundation was in turn three‐fold replicated. During their first few generations, these six foundations showed an abrupt increase in their genetic differentiation, within and between foundations. The eighteen populations that were monitored also differed in their patterns of phenotypic adaptation according to their immediately ancestral founding sample. Differences in early genetic variability and in effective population size were found to predict differences in the rate of adaptation during the first 21 generations of laboratory evolution. We show that evolution in a novel environment is strongly contingent not only on the initial composition of a newly founded population but also on the stochastic changes that occur during the first generations of colonization. Such effects make laboratory populations poor guides to the evolutionary genetic properties of their ancestral wild populations.

19 April 2017 in Scientific Reports
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Journal Article
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PSPedro Simões
Pedro Simões
IFInês Fragata
Inês Fragata
SSSofia G. Seabra
Sofia G. Seabra
GFGonçalo S. Faria
Gonçalo S. Faria
MSMarta A. Santos
Marta A. Santos
Margarida MatosMargarida Matos
Margarida Matos
The relative impact of selection, chance and history will determine the predictability of evolution. There is a lack of empirical research on this subject, particularly in sexual organisms. Here we use experimental evolution to test the predictability of evolution. We analyse the real-time evolution of Drosophila subobscura populations derived from contrasting European latitudes placed in a novel laboratory environment. Each natural population was sampled twice within a three-year interval. We study evolutionary responses at both phenotypic (life-history, morphological and physiological traits) and karyotypic levels for around 30 generations of laboratory culture. Our results show (1) repeatable historical effects between years in the initial state, at both phenotypic and karyotypic levels; (2) predictable phenotypic evolution with general convergence except for body size; and (3) unpredictable karyotypic evolution. We conclude that the predictability of evolution is contingent on the trait and level of organization, highlighting the importance of studying multiple biological levels with respect to evolutionary patterns.

25 September 2006 in Journal of Evolutionary Biology
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Journal Article
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PSPedro Simões
Pedro Simões
MRMichael Rose
Michael Rose
ADA. Duarte
A. Duarte
RGR. Gonçalves
R. Gonçalves
Margarida MatosMargarida Matos
Margarida Matos
The domestication of plants and animals is historically one of the most important topics in evolutionary biology. The evolutionary genetic changes arising from human cultivation are complex because of the effects of such varied processes as continuing natural selection, artificial selection, deliberate inbreeding, genetic drift and hybridization of different lineages. Despite the interest of domestication as an evolutionary process, few studies of multicellular sexual species have approached this topic using well-replicated experiments. Here we present a comprehensive study in which replicated evolutionary trajectories from several Drosophila subobscura populations provide a detailed view of the evolutionary dynamics of domestication in an outbreeding animal species. Our results show a clear evolutionary response in fecundity traits, but no clear pattern for adult starvation resistance and juvenile traits such as development time and viability. These results supply new perspectives on the confounding of adaptation with other evolutionary mechanisms in the process of domestication.

1 January 2024 in Ecological Solutions and Evidence
Verified
Journal Article
Open access
LDLiam R. Dougherty
Liam R. Dougherty
FFFay Frost
Fay Frost
MMMaarit I. Maenpaa
Maarit I. Maenpaa
Melissah RoweMelissah Rowe
Melissah Rowe
BCBenjamin J. Cole
Benjamin J. Cole
TPTom Price
Tom Price
Exposure to extreme temperatures can negatively affect animal reproduction, by disrupting the ability of individuals to produce any offspring (fertility), or the number of offspring produced by fertile individuals (fecundity). This has important ecological consequences, because reproduction is the ultimate measure of population fitness: a reduction in reproductive output lowers the population growth rate and increases the extinction risk. Despite this importance, there have been no large‐scale summaries of the evidence for effect of temperature on reproduction. We provide a systematic map of studies testing the relationship between temperature and animal reproduction. We systematically searched for published studies that statistically test for a direct link between temperature and animal reproduction, in terms of fertility, fecundity or indirect measures of reproductive potential (gamete and gonad traits). Overall, we collated a large and rich evidence base, with 1654 papers that met our inclusion criteria, encompassing 1191 species. The map revealed several important research gaps. Insects made up almost half of the dataset, but reptiles and amphibians were uncommon, as were non‐arthropod invertebrates. Fecundity was the most common reproductive trait examined, and relatively few studies measured fertility. It was uncommon for experimental studies to test exposure of different life stages, exposure to short‐term heat or cold shock, exposure to temperature fluctuations, or to independently assess male and female effects. Studies were most often published in journals focusing on entomology and pest control, ecology and evolution, aquaculture and fisheries science, and marine biology. Finally, while individuals were sampled from every continent, there was a strong sampling bias towards mid‐latitudes in the Northern Hemisphere, such that the tropics and polar regions are less well sampled. This map reveals a rich literature of studies testing the relationship between temperature and animal reproduction, but also uncovers substantial missing treatment of taxa, traits, and thermal regimes. This database will provide a valuable resource for future quantitative meta‐analyses, and direct future studies aiming to fill identified gaps.

16 December 2015 in Evolution
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Journal Article
Closed access
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IFInês Fragata
Inês Fragata
MLMiguel Lopes-Cunha
Miguel Lopes-Cunha
MBMargarida Bárbaro
Margarida Bárbaro
BKBárbara Kellen
Bárbara Kellen
MLMargarida Lima
Margarida Lima
Margarida MatosMargarida Matos
Margarida Matos