This paper proposes a deep learning approach for accelerating magnetic resonance imaging (MRI) using a large number of existing high quality MR images as the training datasets. An off-line convolutional neural network is designed and trained to identify the mapping relationship between the MR images obtained from zero-filled and fully-sampled k-space data. The network is not only capable of restoring fine structures and details but is also compatible with online constrained reconstruction methods. Experimental results on real MR data have shown encouraging performance of the proposed method for efficient and accurate imaging.
19 October 2021 in IEEE Transactions on Multimedia
Recent transformer-based models, especially patch-based methods, have shown huge potentiality in vision tasks. However, the split fixed-size patches divide the input features into the same size patches, which ignores the fact that vision elements are often various and thus may destroy the semantic information. Also, the vanilla patch-based transformer cannot guarantee the information communication between patches, which will prevent the extraction of attention information with a global view. To circumvent those problems, we propose the Efficient Attention Pyramid Transformer (EAPT) in this paper. More specifically, we first propose Deformable Attention, which learns an offset for each position in patches. Therefore, even with split fixed-size patches, our method can still obtain non-fixed attention information that can cover various vision elements. Then, we design the Encode-Decode Communication module (En-DeC module), which can obtain communication information between all patches to get more complete global attention information. Finally, we also proposed a position encoding specifically for vision transformers, which can be used for patches of any dimensions and any lengths. Extensive experiments on the vision tasks of image classification, object detection, semantic segmentation demonstrate the effectiveness of our proposed model. Furthermore, we also conduct rigorous ablation studies to evaluate the key components of the proposed structure.
17 October 2018 in IEEE Transactions on Medical Imaging
The accurate identification of malignant lung nodules on chest CT is critical for the early detection of lung cancer, which also offers patients the best chance of cure. Deep learning methods have recently been successfully introduced to computer vision problems, although substantial challenges remain in the detection of malignant nodules due to the lack of large training datasets. In this paper, we propose a multi-view knowledge-based collaborative (MV-KBC) deep model to separate malignant from benign nodules using limited chest CT data. Our model learns 3D lung nodule characteristics by decomposing a 3D nodule into nine fixed views. For each view, we construct a knowledge-based collaborative (KBC) submodel, where three types of image patches are designed to fine-tune three pre-trained ResNet-50 networks that characterize the nodules’ overall appearance, voxel and shape heterogeneity, respectively. We jointly use the nine KBC submodels to classify lung nodules with an adaptive weighting scheme learned during the error back propagation, which enables the MV-KBC model to be trained in an end-to-end manner. The penalty loss function is used for better reduction of the false negative rate with a minimal effect on the overall performance of the MV-KBC model. We tested our method on the benchmark LIDC-IDRI dataset and compared it to five state-of-the-art classification approaches. Our results show that the MV-KBC model achieved an accuracy of 91.60% for lung nodule classification with an AUC of 95.70%. These results are markedly superior to the state-of-the-art approaches.
7 June 2017 in IEEE Transactions on Biomedical Engineering
Objective: Segmentation of skin lesions is an important step in the automated computer aided diagnosis of melanoma. However, existing segmentation methods have a tendency to over- or under-segment the lesions and perform poorly when the lesions have fuzzy boundaries, low contrast with the background, inhomogeneous textures, or contain artifacts. Furthermore, the performance of these methods are heavily reliant on the appropriate tuning of a large number of parameters as well as the use of effective preprocessing techniques, such as illumination correction and hair removal. Methods: We propose to leverage fully convolutional networks (FCNs) to automatically segment the skin lesions. FCNs are a neural network architecture that achieves object detection by hierarchically combining low-level appearance information with high-level semantic information. We address the issue of FCN producing coarse segmentation boundaries for challenging skin lesions (e.g., those with fuzzy boundaries and/or low difference in the textures between the foreground and the background) through a multistage segmentation approach in which multiple FCNs learn complementary visual characteristics of different skin lesions; early stage FCNs learn coarse appearance and localization information while late-stage FCNs learn the subtle characteristics of the lesion boundaries. We also introduce a new parallel integration method to combine the complementary information derived from individual segmentation stages to achieve a final segmentation result that has accurate localization and well-defined lesion boundaries, even for the most challenging skin lesions. Results: We achieved an average Dice coefficient of 91.18% on the ISBI 2016 Skin Lesion Challenge dataset and 90.66% on the PH2 dataset. Conclusion and Significance: Our extensive experimental results on two well-established public benchmark datasets demonstrate that our method is more effective than other state-of-the-art methods for skin lesion segmentation.
1 June 2021 in IEEE Transactions on Industrial Informatics
Domestic waste classification was incorporated into legal provisions recently in China. However, relying on manpower to detect and classify domestic waste is highly inefficient. To that end, in this article, we propose a multimodel cascaded convolutional neural network (MCCNN) for domestic waste image detection and classification. MCCNN combined three subnetworks (DSSD, YOLOv4, and Faster-RCNN) to obtain the detections. Moreover, to suppress the false-positive predicts, we utilized a classification model cascaded with the detection part to judge whether the detection results are correct. To train and evaluate MCCNN, we designed a large-scale waste image dataset (LSWID), containing 30 000 domestic waste multilabeled images with 52 categories. To the best of our knowledge, the LSWID is the largest dataset on domestic waste images. Furthermore, a smart trash can is designed and applied to a Shanghai community, which helped to make waste recycling more efficient. Experimental results showed a state-of-the-art performance, with an average improvement of 10% in detection precision.