Miguel Coimbra

Miguel Coimbra


Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 2012 in IEEE Transactions on Biomedical Engineering
Verified
Journal Article
Closed access
CYCan Ye
Can Ye
BKB. V. K. Vijaya Kumar
B. V. K. Vijaya Kumar
MCMiguel Coimbra
Miguel Coimbra
In this paper, we propose a new approach for heartbeat classification based on a combination of morphological and dynamic features. Wavelet transform and independent component analysis (ICA) are applied separately to each heartbeat to extract morphological features. In addition, RR interval information is computed to provide dynamic features. These two different types of features are concatenated and a support vector machine classifier is utilized for the classification of heartbeats into one of 16 classes. The procedure is independently applied to the data from two ECG leads and the two decisions are fused for the final classification decision. The proposed method is validated on the baseline MIT-BIH arrhythmia database and it yields an overall accuracy (i.e., the percentage of heartbeats correctly classified) of 99.3% (99.7% with 2.4% rejection) in the “class-oriented” evaluation and an accuracy of 86.4% in the “subject-oriented” evaluation, comparable to the state-of-the-art results for automatic heartbeat classification.

9 June 2016 in Endoscopy
Verified
Journal Article
Closed access
PDF file
PPPedro Pimentel-Nunes
Pedro Pimentel-Nunes
DLDiogo Libânio
Diogo Libânio
JLJorge Lage
Jorge Lage
DADiogo Abrantes
Diogo Abrantes
MCMiguel Coimbra
Miguel Coimbra
MDMário Dinis-Ribeiro
Mário Dinis-Ribeiro
Background and aim: Some studies suggest that narrow-band imaging (NBI) can be more accurate at diagnosing gastric intestinal metaplasia and dysplasia than white-light endoscopy (WLE) alone. We aimed to assess the real-time diagnostic validity of high resolution endoscopy with and without NBI in the diagnosis of gastric premalignant conditions and to derive a classification for endoscopic grading of gastric intestinal metaplasia (EGGIM). Methods: A multicenter prospective study (five centers: Portugal, Italy, Romania, UK, USA) was performed involving the systematic use of high resolution gastroscopes with image registry with and without NBI in a centralized informatics platform (available online). All users used the same NBI classification. Histologic result was considered the diagnostic gold standard. Results: A total of 238 patients and 1123 endoscopic biopsies were included. NBI globally increased diagnostic accuracy by 11 percentage points (NBI 94 % vs. WLE 83 %; P < 0.001) with no difference in the identification of Helicobacter pylori gastritis (73 % vs. 74 %). NBI increased sensitivity for the diagnosis of intestinal metaplasia significantly (87 % vs. 53 %; P < 0.001) and for the diagnosis of dysplasia (92 % vs. 74 %). The added benefit of NBI in terms of diagnostic accuracy was greater in OLGIM III/IV than in OLGIM I/II (25 percentage points vs. 15 percentage points, respectively; P < 0.001). The area under the curve (AUC) of the receiver operating characteristic (ROC) curve for EGGIM in the identification of extensive metaplasia was 0.98. Conclusions: In a real-time scenario, NBI demonstrates a high concordance with gastric histology, superior to WLE. Diagnostic accuracy higher than 90 % suggests that routine use of NBI allows targeted instead of random biopsy samples. EGGIM also permits immediate grading of intestinal metaplasia without biopsies and merits further investigation.

3 June 2022 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Open access
JOJorge Oliveira
Jorge Oliveira
Francesco RennaFrancesco Renna
Francesco Renna
PCPaulo Dias Costa
Paulo Dias Costa
MNMarcelo Nogueira
Marcelo Nogueira
COCristina Oliveira
Cristina Oliveira
MCMiguel Coimbra
Miguel Coimbra
Cardiac auscultation is one of the most cost-effective techniques used to detect and identify many heart conditions. Computer-assisted decision systems based on auscultation can support physicians in their decisions. Unfortunately, the application of such systems in clinical trials is still minimal since most of them only aim to detect the presence of extra or abnormal waves in the phonocardiogram signal, i.e., only a binary ground truth variable (normal vs abnormal) is provided. This is mainly due to the lack of large publicly available datasets, where a more detailed description of such abnormal waves (e.g., cardiac murmurs) exists. To pave the way to more effective research on healthcare recommendation systems based on auscultation, our team has prepared the currently largest pediatric heart sound dataset. A total of 5282 recordings have been collected from the four main auscultation locations of 1568 patients, in the process, 215780 heart sounds have been manually annotated. Furthermore, and for the first time, each cardiac murmur has been manually annotated by an expert annotator according to its timing, shape, pitch, grading, and quality. In addition, the auscultation locations where the murmur is present were identified as well as the auscultation location where the murmur is detected more intensively. Such detailed description for a relatively large number of heart sounds may pave the way for new machine learning algorithms with a real-world application for the detection and analysis of murmur waves for diagnostic purposes.

1 May 2006 in IEEE Transactions on Circuits and Systems for Video Technology
Verified
Journal Article
Closed access
MCMiguel Coimbra
Miguel Coimbra
JCJoão Paulo Silva Cunha
João Paulo Silva Cunha
Recent advances in miniaturization led to the development of what is now called the endoscopic capsule. This small device is swallowed by a patient and films the whole gastrointestinal tract, allowing the detection of abnormalities. Currently, a doctor typically needs up to two hours to analyze a full exam, so automation is desirable. This paper presents a methodology for measuring the potential of selected visual MPEG-7 descriptors for the task of specific medical event detection such as blood, ulcers. Experiments show that the best results are obtained by the Scalable Color and Homogenous Texture descriptors, especially if only relevant coefficients are used.

21 January 2019 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Closed access
Francesco RennaFrancesco Renna
Francesco Renna
JOJorge Henrique Oliveira
Jorge Henrique Oliveira
MCMiguel Coimbra
Miguel Coimbra
This paper studies the use of deep convolutional neural networks to segment heart sounds into their main components. The proposed methods are based on the adoption of a novel deep convolutional neural network architecture, which is inspired by similar approaches used for image segmentation. Different temporal modeling schemes are applied to the output of the proposed neural network, which induce the output state sequence to be consistent with the natural sequence of states within a heart sound signal (S1, systole, S2, diastole). In particular, convolutional neural networks are used in conjunction with underlying hidden Markov models and hidden semi-Markov models to infer emission distributions. The proposed approaches are tested on heart sound signals from the publicly available PhysioNet dataset, and they are shown to outperform current state-of-the-art segmentation methods by achieving an average sensitivity of 93.9% and an average positive predictive value of 94% in detecting S1 and S2 sounds.

11 September 2023 in PLOS Digital Health
Verified
Journal Article
Open access
PDF file
MRMatthew A Reyna
Matthew A Reyna
YKYashar Kiarashi
Yashar Kiarashi
AEAndoni Elola
Andoni Elola
JOJorge Oliveira
Jorge Oliveira
FRFrancesco Renna
Francesco Renna
GCGari D. Clifford
Gari D. Clifford
Cardiac auscultation is an accessible diagnostic screening tool that can help to identify patients with heart murmurs, who may need follow-up diagnostic screening and treatment for abnormal cardiac function. However, experts are needed to interpret the heart sounds, limiting the accessibility of cardiac auscultation in resource-constrained environments. Therefore, the George B. Moody PhysioNet Challenge 2022 invited teams to develop algorithmic approaches for detecting heart murmurs and abnormal cardiac function from phonocardiogram (PCG) recordings of heart sounds. For the Challenge, we sourced 5272 PCG recordings from 1452 primarily pediatric patients in rural Brazil, and we invited teams to implement diagnostic screening algorithms for detecting heart murmurs and abnormal cardiac function from the recordings. We required the participants to submit the complete training and inference code for their algorithms, improving the transparency, reproducibility, and utility of their work. We also devised an evaluation metric that considered the costs of screening, diagnosis, misdiagnosis, and treatment, allowing us to investigate the benefits of algorithmic diagnostic screening and facilitate the development of more clinically relevant algorithms. We received 779 algorithms from 87 teams during the Challenge, resulting in 53 working codebases for detecting heart murmurs and abnormal cardiac function from PCG recordings. These algorithms represent a diversity of approaches from both academia and industry, including methods that use more traditional machine learning techniques with engineered clinical and statistical features as well as methods that rely primarily on deep learning models to discover informative features. The use of heart sound recordings for identifying heart murmurs and abnormal cardiac function allowed us to explore the potential of algorithmic approaches for providing more accessible diagnostic screening in resource-constrained environments. The submission of working, open-source algorithms and the use of novel evaluation metrics supported the reproducibility, generalizability, and clinical relevance of the research from the Challenge.