Marcos A. Caraballo-Ortiz

Dr. Marcos A. Caraballo-Ortiz

Botany Department, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 August 2011 in Journal of Tropical Ecology
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Journal Article
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Marcos A. Caraballo-OrtizMarcos A. Caraballo-Ortiz
Marcos A. Caraballo-Ortiz
ESEugenio Santiago-Valentín
Eugenio Santiago-Valentín
TCTomás A. Carlo
Tomás A. Carlo
Pollinator visits to flowers of self-incompatible tropical trees are critical for plant fecundity. However, few studies have examined how much of the variance in tropical tree fecundity is explained by individual attributes of trees (e.g. number of flowers), and how much is due to contextual variables such as distances to nearest flowering neighbours. Using multiple regressions we examined the relative contributions of these factors to the pollination and fecundity of Goetzea elegans, a mainly self-incompatible tree endemic to Puerto Rico. We studied the largest wild population of the species during the peak flowering and collected data on the frequency of pollinator visits (N = 25 trees), and the fecundity of the whole population (N = 105), including the visitation rate of two pollinators (the honey bee Apis mellifera and the bananaquit Coereba flaveola), the total number of flowers produced by each tree, and the total fruit set and seed viability per tree. We also recorded the distance to flowering conspecifics and heterospecifics, and the height for each tree. Flower number had a strong positive effect on pollinator visitation, but distance to nearest neighbours was equally or more important than flower number in influencing fecundity. Also, competition for limited pollinators between G. elegans and other species has a stronger effect than the facilitation that conspecifics may provide. Our results suggest that pollinator visits and aspects of fecundity of G. elegans depend both on the attributes of individual plants, and on those of the community of other nearby plants.

22 May 2017 in Journal of Ecology
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Marcos A. Caraballo-OrtizMarcos A. Caraballo-Ortiz
Marcos A. Caraballo-Ortiz
AGAarón González-Castro
Aarón González-Castro
SYSuann Yang
Suann Yang
CDClaude W. Depamphilis
Claude W. Depamphilis
TCTomás A. Carlo
Tomás A. Carlo
Summary: The interplay between dispersal and adaptation to local environments ultimately determines the distribution of plant species, but their relative contribution remains little understood. Tropical mistletoes provide the opportunity to dissect these contributions of dispersal and adaptation, because as hemiparasitic plants, they are typically adapted to grow on a handful of species within diverse tropical communities and are non‐randomly dispersed by mutualistic frugivorous birds. Here we hypothesized that the primary determinant of the abundance of a tropical mistletoe (Dendropemon caribaeus, Loranthaceae) in Puerto Rico will be the compatibility between the mistletoe and plant species in a community. Alternatively, the mistletoe's abundance could be primarily shaped by other factors such as the availability of potential host plants, or factors that determine how mistletoe seeds are dispersed by avian frugivores. We conducted surveys and experiments to assess the capacity of this mistletoe to grow on trees available in the local community, and measured the monthly phenology and seed dispersal patterns of the mistletoe and other bird‐dispersed plants in the community over a period of 4 years. A path model was used to evaluate how the abundance of the mistletoe was shaped by host abundance, fruiting phenology, bird dispersal and compatibilities with host plants. Our analyses show that the compatibility between mistletoe and host tree species, measured by mistletoe survival and growth rate, was the most important factor for mistletoe abundance. The next most important factor was the phenological characteristics of the hosts; this outcome likely arose because frugivory and seed dispersal services for mistletoes and hosts are performed by the same birds. Synthesis. Mistletoes often parasitize only a subset of the suitable plant species that are available in a given community. Our results indicate that such patterns are not only determined by host quality and abundance but also by the phenological patterns of trees that influence the probabilities of mistletoe seeds being deposited on them by shared avian seed dispersers.

3 February 2022 in Diversity
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Journal Article
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GFGui Fu
Gui Fu
YLYuping Liu
Yuping Liu
Marcos A. Caraballo-OrtizMarcos A. Caraballo-Ortiz
Marcos A. Caraballo-Ortiz
CZChangyuan Zheng
Changyuan Zheng
TLTao Liu
Tao Liu
Xu SuXu Su
Xu Su
Dracocephalum heterophyllum (Lamiaceae: tribe Mentheae) is an annual aromatic herb native to East Asia with a long record of human uses, including medicinal, alimentary, and ornamental values. However, no information is available about its molecular biology, and no genomic study has been performed on D. heterophyllum. Here, we report the complete chloroplast (cp) genome of D. heterophyllum and a series of comparative genomic analyses between this and closely related species of Lamiaceae. Results indicated that the cp genome has a typical circular structure of 150,869 bp in length, consisting of a long single-copy (LSC) region with 82,410 bp, a short single-copy (SSC) region with 17,098 bp, and two inverted repeat (IR) regions of 51,350 bp. A total of 133 genes were identified, including 37 tRNA genes, 8 rRNA genes and 88 protein-coding genes, with a GC content of 37.8%. The gene content, organization, and GC values observed here were similar to those of other Dracocephalum species. We detected 99 different simple sequence repeat loci, and the codon usage analysis revealed a preferential use of the Leu codon with an A/U ending. Comparative analysis of cp genome sequences revealed five highly variable regions with remarkably higher Pi values (>0.03). The mean Ka/Ks between D. heterophyllum and three other Dracocephalum species ranged from 0.01079 (psbB) to 1.0497 (ycf2). Two cp genes, ycf2 and rps11, were proven to have high ratios of Ka/Ks, implying that cp genes may had undergone positive selection in the evolutionary history. We performed multiple sequence alignments using the cp genome of 22 species and constructed maximum likelihood (ML) and Bayesian trees, and found that D. heterophyllum were more closely related to D. moldavica and D. palmatum. In addition, the phylogenetic relationships between Dracocephalum and other members of Lamiaceae were consistent with previous results. These results are valuable for further formulating effective strategies of conservation and management for species in Dracocephalum, as well as providing a foundation for future research on the genetic resources of Dracocephalum.

24 September 2020 in bioRxiv
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SKSudhir Kumar
Sudhir Kumar
QTQiqing Tao
Qiqing Tao
SWSteven Weaver
Steven Weaver
MSMaxwell D Sanderford
Maxwell D Sanderford
Marcos A. Caraballo-OrtizMarcos A. Caraballo-Ortiz
Marcos A. Caraballo-Ortiz
Sayaka MiuraSayaka Miura
Sayaka Miura
We report the likely most recent common ancestor of SARS-CoV-2 – the coronavirus that causes COVID-19. This progenitor SARS-CoV-2 genome was recovered through a novel application and advancement of computational methods initially developed to reconstruct the mutational history of tumor cells in a patient. The progenitor differs from the earliest coronaviruses sampled in China by three variants, implying that none of the earliest patients represent the index case or gave rise to all the human infections. However, multiple coronavirus infections in China and the USA harbored the progenitor genetic fingerprint in January 2020 and later, suggesting that the progenitor was spreading worldwide as soon as weeks after the first reported cases of COVID-19. Mutations of the progenitor and its offshoots have produced many dominant coronavirus strains, which have spread episodically over time. Fingerprinting based on common mutations reveals that the same coronavirus lineage has dominated North America for most of the pandemic. There have been multiple replacements of predominant coronavirus strains in Europe and Asia and the continued presence of multiple high-frequency strains in Asia and North America. We provide a continually updating dashboard of global evolution and spatiotemporal trends of SARS-CoV-2 spread ( http://sars2evo.datamonkey.org/ ).

1 March 2022 in Biodiversity Data Journal
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Journal Article
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DTDanilo Tandang
Danilo Tandang
MAMarjorie Delos Angeles
Marjorie Delos Angeles
JIJr. E. Buot Inocencio
Jr. E. Buot Inocencio
JBJr. Buot
Jr. Buot
MDMohan Prasad Devkota
Mohan Prasad Devkota
Marcos A. Caraballo-OrtizMarcos A. Caraballo-Ortiz
Marcos A. Caraballo-Ortiz
The extensive forests over limestone of the Samar Island Natural Park (SINP) on Samar Island, Philippines harbour a rich variety of unique species. In this contribution, we describe and illustrate a new Loranthaceous mistletoe, endemic to Samar Island named Decaisnina tomentosa, representing the 12th member of the genus reported to the Philippines. This new species is similar to D. confertiflora (Merr.) Barlow with respect to the presence of shortly and densely off-white tomentose inflorescence and 6-merous flowers. However, it is unique amongst congeners in having tomentose and partially fused bracteoles which cover almost or entirely the ovary of individual flowers in the triads. To date, D. tomentosa seems to be restricted to the SINP and is only known from a handful of individuals. More studies are needed to properly assess the demography, host range, conservation status and phylogenetic position of this distinctive species of mistletoe.

26 September 2017 in PhytoKeys
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Journal Article
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Marcos A. Caraballo-OrtizMarcos A. Caraballo-Ortiz
Marcos A. Caraballo-Ortiz
JTJorge C. Trejo-Torres
Jorge C. Trejo-Torres
In this paper, we describe two endemic tree species of Pisonia (Caryophyllales: Nyctaginaceae) from Puerto Rico that were erroneously catalogued under the single name Pisonia subcordata var. typica f. gigantophylla, misidentified as P. albida or P. subcordata, and informally named as “P. borinquena” and “P. woodburyana”. The species here named as P. horneae is a rare to locally occasional tree from low elevations in the Northern Karst and the Sierra de Cayey. The other species, here named as P. roqueae, is a rare to locally common tree from mid to high elevations in the Central Mountain Range and the Luquillo Mountains. We provide an account of the taxonomical and nomenclatural history of both species, images, conservation notes, a distribution map, and a key to distinguish the species of Pisonia present in Puerto Rico. In this paper, we describe two endemic tree species of Pisonia (Caryophyllales: Nyctaginaceae) from Puerto Rico that were erroneously catalogued under the single name Pisonia subcordata var. typica f. gigantophylla, misidentified as P. albida or P. subcordata, and informally named as “P. borinquena” and “P. woodburyana”. The species here named as P. horneae is a rare to locally occasional tree from low elevations in the Northern Karst and the Sierra de Cayey. The other species, here named as P. roqueae, is a rare to locally common tree from mid to high elevations in the Central Mountain Range and the Luquillo Mountains. We provide an account of the taxonomical and nomenclatural history of both species, images, conservation notes, a distribution map, and a key to distinguish the species of Pisonia present in Puerto Rico.