Alexander L Kovalchuk

Dr. Alexander L Kovalchuk

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 June 2021 in Nature Communications
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SRSamuel Rivero-Hinojosa
Samuel Rivero-Hinojosa
EPElena M. Pugacheva
Elena M. Pugacheva
SKSungyun Kang
Sungyun Kang
CMClaudia Fabiola Mendez-Catala
Claudia Fabiola Mendez-Catala
AKAlexander L Kovalchuk
Alexander L Kovalchuk
VLVictor Lobanenkov
Victor Lobanenkov
CTCF is a key organizer of the 3D genome. Its specialized paralog, BORIS, heterodimerizes with CTCF but is expressed only in male germ cells and in cancer states. Unexpectedly, BORIS-null mice have only minimal germ cell defects. To understand the CTCF-BORIS relationship, mouse models with varied CTCF and BORIS levels were generated. Whereas Ctcf+/+Boris+/+, Ctcf+/−Boris+/+, and Ctcf+/+Boris−/− males are fertile, Ctcf+/−Boris−/− (Compound Mutant; CM) males are sterile. Testes with combined depletion of both CTCF and BORIS show reduced size, defective meiotic recombination, increased apoptosis, and malformed spermatozoa. Although CM germ cells exhibit only 25% of CTCF WT expression, chromatin binding of CTCF is preferentially lost from CTCF-BORIS heterodimeric sites. Furthermore, CM testes lose the expression of a large number of spermatogenesis genes and gain the expression of developmentally inappropriate genes that are “toxic” to fertility. Thus, a combined action of CTCF and BORIS is required to both repress pre-meiotic genes and activate post-meiotic genes for a complete spermatogenesis program.

11 January 2023 in BioTech
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YKYulia Alexandrovna Khodak
Yulia Alexandrovna Khodak
ARAlexandra Yurievna Ryazanova
Alexandra Yurievna Ryazanova
IVIvan Ivanovich Vorobiev
Ivan Ivanovich Vorobiev
AKAlexander L Kovalchuk
Alexander L Kovalchuk
NONikolay Nikolaevich Ovechko
Nikolay Nikolaevich Ovechko
PAPetr Gennadievich Aparin
Petr Gennadievich Aparin
Cross-reacting material 197 (CRM197) is a non-toxic mutant of the diphtheria toxin and is widely used as a carrier protein in conjugate vaccines. This protein was first obtained from the supernatant of the mutant Corynebacterium diphtheriae strain. This pathogenic bacteria strain is characterized by a slow growth rate and a relatively low target protein yield, resulting in high production costs for CRM197. Many attempts have been made to establish high-yield protocols for the heterologous expression of recombinant CRM197 in different host organisms. In the present work, a novel CRM197-producing Escherichia coli strain was constructed. The target protein was expressed in the cytoplasm of SHuffle T7 E. coli cells without any additional tags and with a single potential mutation—an additional Met [−1]. The fine tuning of the mRNA structure (the disruption of the single hairpin in the start codon area) was sufficient to increase the CRM197 expression level several times, resulting in 150–270 mg/L (1.1–2.0 mg/g wet biomass) yields of pure CRM197 protein. Besides the high yield, the advantages of the obtained expression system include the absence of the necessity of CRM197 refolding or tag removal. Thus, an extensive analysis of the mRNA structure and the removal of the unwanted hairpins in the 5′ area may significantly improve the target protein expression rate.

3 February 2023 in Vaccines
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VLVladimir Ledov
Vladimir Ledov
MGMarina E. Golovina
Marina E. Golovina
BABiana I. Alkhazova
Biana I. Alkhazova
VLVyacheslav L. Lvov
Vyacheslav L. Lvov
AKAlexander L Kovalchuk
Alexander L Kovalchuk
PAPetr G Aparin
Petr G Aparin
A multivalent vaccine is much needed to achieve protection against predominant Shigella serotypes. Recently, we demonstrated the clinical applicability and immunogenic potential of tri-acylated S. flexneri 2a lipopolysaccharide (Ac3-S-LPS). Using a similar approach, we designed a pentavalent LPS candidate vaccine against S. flexneri 1b, 2a, 3a, 6, and Y (PLVF). In this study, we performed molecular and antigenic characterization of the vaccine candidate and its preclinical evaluation. There were no signs of acute toxicity after subcutaneous administration of PLVF in rabbits at a proposed human dose of 125 μg. No pyrogenic reactions and adverse effects associated with chronic toxicity after repeated administration of PLVF were revealed either. The immunization of mice with PLVF led to ≥16-fold increase in S. flexneri 1b-, 2a-, 3a-, 6-, and Y-specific antibodies. In a serum bactericidal antibody (SBA) assay, we registered 54%, 66%, 35%, 60%, and 60% killing of S. flexneri 1b, 2a, 3a, 6, and Y, respectively. In the guinea pig keratoconjunctivitis model, the efficacy was 50% to 75% against challenge with all five S. flexneri serotypes. These studies demonstrate that PLVF is safe, immunogenic over a wide range of doses, and provides protection against challenge with homologous S. flexneri strains, thus confirming the validity of pentavalent design of the combined vaccine.

1 November 2022 in Vaccines
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ИДИван Алексеевич Дятлов
Иван Алексеевич Дятлов
ESEdward A. Svetoch
Edward A. Svetoch
AMAnna A. Mironenko
Anna A. Mironenko
BEBoris V. Eruslanov
Boris V. Eruslanov
VFVictoria V. Firstova
Victoria V. Firstova
PAPetr G Aparin
Petr G Aparin
Background: Shiga toxin-producing Escherichia coli (STEC) O157:H7 and O104:H4 strains are important causative agents of food-borne diseases such as hemorrhagic colitis and hemolytic–uremic syndrome, which is the leading cause of kidney failure and death in children under 5 years as well as in the elderly. Methods: the native E. coli O157:H7 and O104:H4 lipopolysaccharides (LPS) were partially deacylated under alkaline conditions to obtain apyrogenic S-LPS with domination of tri-acylated lipid A species—Ac3-S-LPS. Results: intraperitoneal immunization of BALB/c mice with Ac3-S-LPS antigens from E. coli O157:H7 and O104:H4 or combination thereof (di-vaccine) at single doses ranging from 25 to 250 µg induced high titers of serum O-specific IgG (mainly IgG1), protected animals against intraperitoneal challenge with lethal doses of homologous STEC strains (60–100% survival rate) and reduced the E. coli O157:H7 and O104:H4 intestinal colonization under an in vivo murine model (6–8-fold for monovalent Ac3-S-LPS and 10-fold for di-vaccine). Conclusions: Di-vaccine induced both systemic and intestinal anti-colonization immunity in mice simultaneously against two highly virulent human STEC strains. The possibility of creating a multivalent STEC vaccine based on safe Ac3-S-LPS seems to be especially promising due to a vast serotype diversity of pathogenic E. coli.

18 November 2022 in Antibiot Khimioter = Antibiotics and Chemotherapy
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NPNataliya Petrova
Nataliya Petrova
AEAlexandra Emelianova
Alexandra Emelianova
AKAlexander L Kovalchuk
Alexander L Kovalchuk
STSergey Tarasov
Sergey Tarasov
Роль молекул MHC I и II в антибактериальном иммунитете и лечении бактериальных инфекций

30 March 2023
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Other
Open access
CQChen-Feng Qi
Chen-Feng Qi
JZJeff X. Zhou
Jeff X. Zhou
CLChang Hoon Lee
Chang Hoon Lee
ZNZohreh Naghashfar
Zohreh Naghashfar
SXShao Xiang
Shao Xiang
HMHerbert C. Morse
Herbert C. Morse
Supplementary Figure 2 from Anaplastic, Plasmablastic, and Plasmacytic Plasmacytomas of Mice: Relationships to Human Plasma Cell Neoplasms and Late-Stage Differentiation of Normal B Cells