Amaia Zúñiga-Ripa

Dr. Amaia Zúñiga-Ripa

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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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16 December 2014 in Proceedings of the National Academy of Sciences
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TBThibault Barbier
Thibault Barbier
FCFrançois Collard
François Collard
AZAmaia Zúñiga-Ripa
Amaia Zúñiga-Ripa
IMIgnacio Moriyón
Ignacio Moriyón
TGThibault Godard
Thibault Godard
JLJean-Jacques Letesson
Jean-Jacques Letesson
Significance: Erythritol is a preferential substrate for Brucella , a common zoonotic bacterial pathogen. This four-carbon polyol is found in the reproductive organs of several affected species, a feature that may account for the characteristic viscerotropism of Brucella that leads to sterility and abortion. Although described previously as feeding glycolysis via dihydroxyacetone-phosphate, we show here that erythritol is actually converted into D-erythrose-4-phosphate through a hitherto undescribed set of reactions that involves three isomerases and that allows hexose-monophosphate synthesis and growth by feeding the pentose phosphate shunt. Elucidation of this unique carbohydrate pathway, which also applies to the Rhizobiales plant endosymbionts, opens the way for further research on the metabolic adaptation of an important facultative intracellular pathogen to target organs.

3 July 2023 in Journal of Clinical Microbiology
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Journal Article
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EMEdgardo Moreno
Edgardo Moreno
EMEarl A. Middlebrook
Earl A. Middlebrook
PAPamela Altamirano-Silva
Pamela Altamirano-Silva
SDSascha Al Dahouk
Sascha Al Dahouk
GAGeorge F. Araj
George F. Araj
IMIgnacio Moriyón
Ignacio Moriyón
Bacteria of the genus Brucella are facultative intracellular parasites that cause brucellosis, a severe animal and human disease. Recently, a group of taxonomists merged the brucellae with the primarily free-living, phylogenetically related Ochrobactrum spp. in the genus Brucella .

15 August 2014 in Journal of Bacteriology
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AZAmaia Zúñiga-Ripa
Amaia Zúñiga-Ripa
TBThibault Barbier
Thibault Barbier
RCRaquel Conde-Alvarez
Raquel Conde-Alvarez
EMEstrella Martinez-Gomez
Estrella Martinez-Gomez
LPLeyre Palacios-Chaves
Leyre Palacios-Chaves
IMIgnacio Moriyón
Ignacio Moriyón
The brucellae are the etiological agents of brucellosis, a worldwide-distributed zoonosis. These bacteria are facultative intracellular parasites and thus are able to adjust their metabolism to the extra- and intracellular environments encountered during an infectious cycle. However, this aspect of Brucella biology is imperfectly understood, and the nutrients available in the intracellular niche are unknown. Here, we investigated the central pathways of C metabolism used by Brucella abortus by deleting the putative fructose-1,6-bisphosphatase ( fbp and glpX ), phosphoenolpyruvate carboxykinase ( pckA ), pyruvate phosphate dikinase ( ppdK ), and malic enzyme ( mae ) genes. In gluconeogenic but not in rich media, growth of Δ ppdK and Δ mae mutants was severely impaired and growth of the double Δ fbp -Δ glpX mutant was reduced. In macrophages, only the Δ ppdK and Δ mae mutants showed reduced multiplication, and studies with the Δ ppdK mutant confirmed that it reached the replicative niche. Similarly, only the Δ ppdK and Δ mae mutants were attenuated in mice, the former being cleared by week 10 and the latter persisting longer than 12 weeks. We also investigated the glyoxylate cycle. Although aceA (isocitrate lyase) promoter activity was enhanced in rich medium, aceA disruption had no effect in vitro or on multiplication in macrophages or mouse spleens. The results suggest that B. abortus grows intracellularly using a limited supply of 6-C (and 5-C) sugars that is compensated by glutamate and possibly other amino acids entering the Krebs cycle without a critical role of the glyoxylate shunt.

12 June 2017 in Critical Reviews in Microbiology
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Journal Article
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TBT. Barbier
T. Barbier
AZAmaia Zúñiga-Ripa
Amaia Zúñiga-Ripa
SMS. Moussa
S. Moussa
HPH. Plovier
H. Plovier
JSJ. F. Sternon
J. F. Sternon
JLJ. J. Letesson
J. J. Letesson
The brucellae are facultative intracellular pathogens causing brucellosis, an important zoonosis. Here, we review the nutritional, genetic, proteomic and transcriptomic studies on Brucella carbon uptake and central metabolism, information that is needed for a better understanding of Brucella virulence. There is no uniform picture across species but the studies suggest primary and/or secondary transporters for unknown carbohydrates, lactate, glycerol phosphate, erythritol, xylose, ribose, glucose and glucose/galactose, and routes for their incorporation to central metabolism, including an erythritol pathway feeding the pentose phosphate cycle. Significantly, all brucellae lack phosphoenolpyruvate synthase and phosphofructokinase genes, which confirms previous evidence on glycolysis absence, but carry all Entner-Doudoroff (ED) pathway and Krebs cycle (and glyoxylate pathway) genes. However, glucose catabolism proceeds through the pentose phosphate cycle in the classical species, and the ED pathway operates in some rodent-associated brucellae, suggesting an ancestral character for this pathway in this group. Gluconeogenesis is functional but does not rely exclusively on classical fructose bisphosphatases. Evidence obtained using infection models is fragmentary but suggests the combined or sequential use of hexoses/pentoses, amino acids and gluconeogenic substrates. We also discuss the role of the phosphotransferase system, stringent reponse, quorum sensing, BvrR/S and sRNAs in metabolism control, an essential aspect of the life style of facultative intracellular parasites.

4 December 2014 in Critical Reviews in Microbiology
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Journal Article
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SRSeverin Ronneau
Severin Ronneau
SMSimon Moussa
Simon Moussa
TBThibault Barbier
Thibault Barbier
RCRaquel Conde-Alvarez
Raquel Conde-Alvarez
AZAmaia Zúñiga-Ripa
Amaia Zúñiga-Ripa
JLJean-Jacques Letesson
Jean-Jacques Letesson
The brucellae are α-Proteobacteria causing brucellosis, an important zoonosis. Although multiplying in endoplasmic reticulum-derived vacuoles, they cause no cell death, suggesting subtle but efficient use of host resources. Brucellae are amino-acid prototrophs able to grow with ammonium or use glutamate as the sole carbon-nitrogen source in vitro. They contain more than twice amino acid/peptide/polyamine uptake genes than the amino-acid auxotroph Legionella pneumophila, which multiplies in a similar vacuole, suggesting a different nutritional strategy. During these two last decades, many mutants of key actors in nitrogen metabolism (transporters, enzymes, regulators, etc.) have been described to be essential for full virulence of brucellae. Here, we review the genomic and experimental data on Brucella nitrogen metabolism and its connection with virulence. An analysis of various aspects of this metabolism (transport, assimilation, biosynthesis, catabolism, respiration and regulation) has highlighted differences and similarities in nitrogen metabolism with other α-Proteobacteria. Together, these data suggest that, during their intracellular life cycle, the brucellae use various nitrogen sources for biosynthesis, catabolism and respiration following a strategy that requires prototrophy and a tight regulation of nitrogen use.

17 July 2014 in Veterinary Research
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PSPedro Soler-Lloréns
Pedro Soler-Lloréns
YGYolanda Gil-Ramírez
Yolanda Gil-Ramírez
AZAna Zabalza-Baranguá
Ana Zabalza-Baranguá
MIMaite Iriarte
Maite Iriarte
RCRaquel Conde-Alvarez
Raquel Conde-Alvarez
ILIgnacio López-Goñi
Ignacio López-Goñi
Brucella spp. are Gram-negative bacteria that behave as facultative intracellular parasites of a variety of mammals. This genus includes smooth (S) and rough (R) species that carry S and R lipopolysaccharides (LPS), respectively. S-LPS is a virulence factor, and mutants affected in the S-LPS O-polysaccharide (R mutants), core oligosaccharide or both show attenuation. However, B. ovis is naturally R and is virulent in sheep. We studied the role of B. ovis LPS in virulence by mutating the orthologues of wadA, wadB and wadC, three genes known to encode LPS core glycosyltransferases in S brucellae. When mapped with antibodies to outer membrane proteins (Omps) and R-LPS, wadB and wadC mutants displayed defects in LPS structure and outer membrane topology but inactivation of wadA had little or no effect. Consistent with these observations, the wadB and wadC but not the wadA mutants were attenuated in mice. When tested as vaccines, the wadB and wadC mutants protected mice against B. ovis challenge. The results demonstrate that the LPS core is a structure essential for survival in vivo not only of S brucellae but also of a naturally R Brucella pathogenic species, and they confirm our previous hypothesis that the Brucella LPS core is a target for vaccine development. Since vaccine B. melitensis Rev 1 is S and thus interferes in serological testing for S brucellae, wadB mutant represents a candidate vaccine to be evaluated against B. ovis infection of sheep suitable for areas free of B. melitensis.