Peigen Chen

Peigen Chen


Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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19 February 2020 in Aging
Verified
Journal Article
Open access
PCPeigen Chen
Peigen Chen
YYYuebo Yang
Yuebo Yang
YZYu Zhang
Yu Zhang
SJSenwei Jiang
Senwei Jiang
XLXiaoMao Li
XiaoMao Li
JWJing Wan
Jing Wan
Endometrial cancer (EC) is one of the most common gynecologic malignancies. To identify potential prognostic biomarkers for EC, we analyzed the relationship between the EC tumor microenvironment and gene expression profiles. Using the ESTIMATE R tool, we found that immune and stromal scores correlated with clinical data and the prognosis of EC patients. Based on the immune and stromal scores, 387 intersection differentially expressed genes were identified. Eight immune-related genes were then identified using two machine learning algorithms. Functional enrichment analysis revealed that these genes were mainly associated with T cell activation and response. Kaplan-Meier survival analysis showed that expression of TMEM150B, CACNA2D2, TRPM5, NOL4, CTSW, and SIGLEC1 significantly correlated with overall survival times of EC patients. In addition, using the TIMER algorithm, we found that expression of TMEM150B, SIGLEC1, and CTSW correlated positively with the tumor infiltration levels of B cells, CD8+ T cells, CD4+ T cells, macrophages, and dendritic cells. These findings indicate that the composition of the tumor microenvironment affects the clinical outcomes of EC patients, and suggests that it may provide a basis for development of novel prognostic biomarkers and immunotherapies for EC patients.

30 November 2022 in Journal of Reproductive Immunology
Verified
Journal Article
Closed access
YZYixuan Zou
Yixuan Zou
XLXiaoping Liu
Xiaoping Liu
PCPeigen Chen
Peigen Chen
YWYanfang Wang
Yanfang Wang
WLWei Li
Wei Li
RHRui Huang
Rui Huang

10 January 2023 in Journal of Reproductive Immunology
Verified
Journal Article
Closed access
YCYajie Chang
Yajie Chang
JPJintao Peng
Jintao Peng
YZYuanyuan Zhu
Yuanyuan Zhu
PSPeng Sun
Peng Sun
HMHuisi Mai
Huisi Mai
PCPeigen Chen
Peigen Chen

1 January 2020 in BioMed Research International
Verified
Journal Article
Open access
PDF file
YZYu Zhang
Yu Zhang
QYQingjian Ye
Qingjian Ye
JHJunxian He
Junxian He
PCPeigen Chen
Peigen Chen
JWJing Wan
Jing Wan
XLXiaoMao Li
XiaoMao Li
Ovarian cancer (OvCa) is an intractable gynecological malignancy due to the high recurrence rate. Several molecular biomarkers have been previously screened for early identifying patients with a high recurrence risk and poor prognosis. However, all the known studies focused on a single type of RNAs, not integrating various types. This study was to construct a new multi‐RNA‐based model to predict the recurrence and prognosis for OvCa patients by using the messenger RNA (mRNA, including long noncoding RNA (lncRNA)) and microRNA (miRNA) sequencing data of The Cancer Genome Atlas database. After univariate Cox regression and least absolute shrinkage and selection operator analyses, a multi‐RNA‐based signature (2 miRNAs: hsa‐miR‐508, hsa‐miR‐506; 1 lncRNA: TM4SF1‐AS1; 11 mRNAs: MAGI3, SLAMF7, GLI2, PDK1, ARID3A, PLEKHG4B, TNFAIP8L3, C1QTNF3, NDUFAF1, CH25H, TMEM129) was generated and used to establish a risk score model. The high‐ and low‐risk patients classified by the median risk score exhibited significantly different recurrence risks (89% versus 61%, p < 0.001) and survival time (the area under the receiver operating characteristic curve (AUC) = 0.901 for 5‐year disease‐free survival (DFS)). This risk model was independent of other clinical features and superior to pathologic staging for DFS prediction (AUC, 0.906 versus 0.524; C‐index, 0.633 versus 0.510). Furthermore, some new interaction axes were revealed to explain the possible functions of these RNAs (competing endogenous RNA: TM4SF1‐AS1‐miR‐186‐STEAP2, LINC00536‐miR‐508‐STEAP2, LINC00475‐miR‐506‐TMEM129; coexpression: LINC00598‐PLEKHG4B). In conclusion, this multi‐RNA‐based risk model may be clinically useful to stratify OvCa patients with different recurrence risks and survival outcomes and included RNAs may be potential therapeutic targets.

6 August 2024 in Microbiology Spectrum
Verified
Journal Article
Open access
JHJunxian He
Junxian He
MMMenghui Ma
Menghui Ma
ZXZhenhan Xu
Zhenhan Xu
JGJintao Guo
Jintao Guo
HCHaicheng Chen
Haicheng Chen
GLGuihua Liu
Guihua Liu
DNA fragmentation index (DFI), a new biomarker to diagnose male infertility, is closely associated with poor reproductive outcomes. Previous research reported that seminal microbiome correlated with sperm DNA integrity, suggesting that the microbiome may be one of the causes of DNA damage in sperm. However, it has not been elucidated how the microbiota exerts their effects. Here, we used a combination of 16S rRNA sequencing and untargeted metabolomics techniques to investigate the role of microbiota in high sperm DNA fragmentation index (HDFI). We report that increased specific microbial profiles contribute to high sperm DNA fragmentation, thus implicating the seminal microbiome as a new therapeutic target for HDFI patients. Additionally, we found that the amount of Lactobacillus species was altered: Lactobacillus iners was enriched in HDFI patients, shedding light on the potential influence of L. iners on male reproductive health. Finally, we also identified enrichment of the acetyl-CoA fermentation to butanoate II and purine nucleobase degradation I in the high sperm DNA fragmentation samples, suggesting that butanoate may be the target metabolite of sperm DNA damage. These findings provide valuable insights into the complex interplay between microbiota and sperm quality in HDFI patients, laying the foundation for further research and potential clinical interventions. IMPORTANCE: The DNA fragmentation index (DFI) is a measure of sperm DNA fragmentation. Because high sperm DNA fragmentation index (HDFI) has been strongly associated with adverse reproductive outcomes, this has been linked to the seminal microbiome. Because the number of current treatments for HDFI is limited and most of them have no clear efficacy, it is critical to understand how semen microbiome exerts their effects on sperm DNA. Here, we evaluated the semen microbiome and its metabolites in patients with high and low sperm DNA fragmentation. We found that increased specific microbial profiles contribute to high sperm DNA fragmentation. In particular, Lactobacillus iners was uniquely correlated with high sperm DNA fragmentation. Additionally, butanoate may be the target metabolite produced by the microbiome to damage sperm DNA. Our findings support the interaction between semen microbiome and sperm DNA damage and suggest that seminal microbiome should be a new therapeutic target for HDFI patients.

31 August 2022 in Microbiology Spectrum
Verified
Journal Article
Open access
XYXing Yang
Xing Yang
XPXinyi Pan
Xinyi Pan
MLManchao Li
Manchao Li
ZZZhi Zeng
Zhi Zeng
YGYanxian Guo
Yanxian Guo
GLGuihua Liu
Guihua Liu
Cesarean section scar diverticulum (CSD) has become a formidable obstacle preventing women receiving CS from reproducing. In this study, we revealed that potentially harmful microbes do have adverse effects on the host endometrium.